Browse Element(s) Details


Os.15461.1.S1_at

Description gb:AK063924.1
DB_XREF= gi:32973942
TID=Os.15461.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C02, full insert sequence.
FL= gb:AK063924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4126011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41230Os.53244.1.A1_at11/117+24697800..24701979hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g41240OsAffx.28856.1.S1_x_at11/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41240OsAffx.14730.1.S1_x_at1/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15461.1.S1_at--953--2951Chr07:24724352..24724376 (25 bp)
AATGGTCCGGGTTTGAGCAGGCTTT
LOC_Os07g41260
Os.15461.1.S1_at--295--1371Chr07:24726071..24726095 (25 bp)
AGAGCAGTAAATTGTCGTCCTTCAA
LOC_Os07g41260
Os.15461.1.S1_at--973--10591Chr07:24726136..24726160 (25 bp)
TTCTGATCGGAGTCCTTCGTGTGGT
LOC_Os07g41260
Os.15461.1.S1_at--1008--10611Chr07:24726151..24726175 (25 bp)
TTCGTGTGGTTTCTATCTCTTGGAC
LOC_Os07g41260
Os.15461.1.S1_at--542--7931Chr07:24726179..24726203 (25 bp)
GGATTGCTGACACTTTGCTGTGCTG
LOC_Os07g41260
Os.15461.1.S1_at--187--10291Chr07:24726192..24726216 (25 bp)
TTTGCTGTGCTGTTTTATGTTCTCT
LOC_Os07g41260
Os.15461.1.S1_at--726--5151Chr07:24726315..24726339 (25 bp)
GCAACTGTCTTGCAGATCCGTAGTT
LOC_Os07g41260
Os.15461.1.S1_at--462--6351Chr07:24726329..24726353 (25 bp)
GATCCGTAGTTATCGTTTGAGCAAT
LOC_Os07g41260
Os.15461.1.S1_at--582--3111Chr07:24726388..24726412 (25 bp)
AATATTTTATACATCGCCTGCCGAA
LOC_Os07g41260
Os.15461.1.S1_at--19--3831Chr07:24726405..24726429 (25 bp)
CTGCCGAAACTACTCATTTGACCTT
LOC_Os07g41260
Os.15461.1.S1_at--356--5271Chr07:24726443..24726467 (25 bp)
GAATGTGCTCCCCAAAAGAGCTTGA
LOC_Os07g41260
Target Sequence 
AATGGTCCGGGTTTGAGCAGGCTTTGGGTTGGANCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATT
TTGAAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACANTTACNAGTGGCTCACTGACCGCAACANTTTTCTGATCGG
AGTCCTTCGTGTGGTTTCTATCTCTTGGACNATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCTNCAATNCCT
TNGTGTTTCATTAACACAAATAATGAATGTATCANTTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGG
TATATGATGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACACNTCTAGTTTCTCATGAACT
CATGAAATATTTTATACATCGCCTGCCGAAACTACTCATTTGACCTTTTTCTTTGGGTGAGAATGTGCTCCCCAAAAGAG
CTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis