Browse Element(s) Details


Os.6393.1.S1_at

Description gb:AK070405.1
DB_XREF= gi:32980429
TID=Os.6393.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052F08, full insert sequence.
FL= gb:AK070405.1 gb:AK059691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4128011/116-phosphogluconolactonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41240OsAffx.28856.1.S1_x_at11/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41240OsAffx.14730.1.S1_x_at1/117+24712147..24713930Cytochrome P450 78A4, putative, expressed
LOC_Os07g41250Os.27386.1.S1_at11/117+24718480..24722178POT family protein, expressed
LOC_Os07g41250Os.52355.1.S1_at1/117+24718480..24722178POT family protein, expressed
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6393.1.S1_at--748--10391Chr07:24739970..24739994 (25 bp)
TTTTGGACAAGTCAGCTGCGTCCTC
LOC_Os07g41280
Os.6393.1.S1_at--862--7251Chr07:24739989..24740013 (25 bp)
GTCCTCTCTGGATGCCGAGAACGAT
LOC_Os07g41280
Os.6393.1.S1_at--578--5451Chr07:24740007..24740031 (25 bp)
GAACGATGACGCCTTTGAGCAGCAT
LOC_Os07g41280
Os.6393.1.S1_at--621--10251Chr07:24740020..24740044 (25 bp)
TTTGAGCAGCATCGCGAGTACTAAC
LOC_Os07g41280
Os.6393.1.S1_at--603--6071Chr07:24740035..24740059 (25 bp)
GAGTACTAACTCCAATCGTCGAAAG
LOC_Os07g41280
Os.6393.1.S1_at--658--2751Chr07:24740057..24740081 (25 bp)
AAGAACATTCCTTTTGCTGTGGATG
LOC_Os07g41280
Os.6393.1.S1_at--812--10071Chr07:24740102..24740126 (25 bp)
TAGGCGGTTTGGTATGATCGAATTC
LOC_Os07g41280
Os.6393.1.S1_at--443--10691Chr07:24740135..24740159 (25 bp)
TTGCCTTCCAGTTTAGCAGAATGCT
LOC_Os07g41280
Os.6393.1.S1_at--128--5871Chr07:24740199..24740223 (25 bp)
GAGCCTTGAGTGTGTTTTGGTCGTT
LOC_Os07g41280
Os.6393.1.S1_at--468--171Chr07:24740388..24740412 (25 bp)
ATTTTGTTTCCTTGTGATGTTGCCG
LOC_Os07g41280
Os.6393.1.S1_at--428--3051Chr07:24740459..24740483 (25 bp)
AATCGTCGGGCAATCATTTGCTTGA
LOC_Os07g41280
Target Sequence 
TTTTGGACAAGTCAGCTGCGTCCTCTCTGGATGCCGAGAACGATGACGCCTTTGAGCAGCATCGCGAGTACTAACTCCAA
TCGTCGAAAGAACATTCCTTTTGCTGTGGATGAAGGTGTGTGCGTGTGTAAGTAGGCGGTTTGGTATGATCGAATTCAGG
ATGTTTTGCCTTCCAGTTTAGCAGAATGCTTGTTGCATTAGTTTTTTTGTGGAGGGTTTTGTTCAGGGAGAGCCTTGAGT
GTGTTTTGGTCGTTTTGGCAAATTGGAGATGGTTTTAGAGCGAAGAGGATTGAGACGTCAGAACTGAGAACACCCAAATT
TGATTAGGGGTGGTATGATATTATGTGCTACATTATATTTAGTTCAATCAAANTTAGTTCAAGCAAGTCAAGGTGGAAGA
AGCAGAGGCTTTCTGTTAATTTTGTTTCCTTGTGATGTTGCCGGTTCGAGTATAGAAAAATATGATCACAAACTTGATAT
TTTTAANAAAATCGTCGGGCAATCATTTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis