Browse Element(s) Details


OsAffx.27250.1.S1_x_at

Description gb:NM_186192.1
DB_XREF= gi:34899469
GEN=OJ1123_C12.20
TID=OsAffx.27250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) protein translocase-like protein (OJ1123_C12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g072505/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os07g413301/11Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27250.1.S1_x_at--413--3911Chr07:655831..655854 (24 bp)
CGGCCTTTCGGGATGGGCACAGTTA
NONE
OsAffx.27250.1.S1_x_at--1112--9173Chr05:3816847..3816871 (25 bp)
TCCACTTCCTCAAGGGCACCTACAA
LOC_Os05g07250
OsAffx.27250.1.S1_x_at--974--4571Chr07:655738..655762 (25 bp)
GCGCAGGCCGTGCTGATGAACGCGG
NONE
OsAffx.27250.1.S1_x_at--893--8651Chr07:655713..655733 (21 bp)
TGGGCGACAGCTTCGCGGTGTCTTC
NONE
OsAffx.27250.1.S1_x_at--412--5651Chr07:655667..655728 (25 bp)
GACAGCTTCGCGGTGTCTTCATGCA
NONE
OsAffx.27250.1.S1_x_at--505--1552Chr05:3816942..3817003 (25 bp)
AGCTTCGCGGTGTCTTCATGCACCA
LOC_Os05g07250
OsAffx.27250.1.S1_x_at--171--10652Chr05:3816945..3817006 (25 bp)
TTCGCGGTGTCTTCATGCACCAGAA
LOC_Os05g07250
OsAffx.27250.1.S1_x_at--319--4672Chr05:3816990..3817009 (20 bp)
GCGGTGTCTTCATGCACCAGAAGGA
LOC_Os05g07250
OsAffx.27250.1.S1_x_at--37--10531Chr07:655650..655674 (25 bp)
TTCATGCACCAGAAGGAGGATCTGT
NONE
OsAffx.27250.1.S1_x_at--268--5092Chr03:10514933..10514952 (20 bp)
GCACCAGAAGGAGGATCTGTGGAAC
NONE
OsAffx.27250.1.S1_x_at--909--792Chr05:3817101..3817125 (25 bp)
ATGGGCGGGATGCTCCTCGCCCTCA
LOC_Os05g07250
Target Sequence 
CGGCCTTTCGGGATGGGCACAGTTAGGGGCTCCCTCTTCCACTTCCTCAAGGGCACCTACAACTCCCCCAACGGCGAGCG
CCTCGTTGGCGGCGCGCAGGCCGTGCTGATGAACGCGGCGGGTGGGCGACAGCTTCGCGGTGTCTTCATGCACCAGAAGG
AGGATCTGTGGAACTCCATCATCGCCGGCGCCGCCACTAGCGGCTTCCTCTCCATGCGCCAGGGCCTCAACACCGCCGGC
CGCTCCGCGCTCATGGGCGGGATGCTCCTCGCCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27250.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis