Browse Element(s) Details


Os.24661.1.S1_at

Description gb:AK105515.1
DB_XREF= gi:32990724
TID=Os.24661.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F03, full insert sequence.
FL= gb:AK105515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0726011/11phosphatidylinositolglycan, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24661.1.S1_at--1087--1211Chr05:3820553..3820577 (25 bp)
AGTTCATCGTCGTTTTGTGCCAATT
LOC_Os05g07260
Os.24661.1.S1_at--603--2991Chr05:3820602..3820626 (25 bp)
AATGAGTGTGTGACGCCGGTGACCT
LOC_Os05g07260
Os.24661.1.S1_at--997--7371Chr05:3820620..3820644 (25 bp)
GTGACCTGTTACTGGAGCTTGGCAT
LOC_Os05g07260
Os.24661.1.S1_at--416--3611Chr05:3820637..3820661 (25 bp)
CTTGGCATTGCTTCTGCGTGATGAA
LOC_Os05g07260
Os.24661.1.S1_at--390--2011Chr05:3820667..3820766 (25 bp)
ACTCAGGCTAGTTTTCCAGAAATCC
LOC_Os05g07260
Os.24661.1.S1_at--489--9691Chr05:3820777..3820801 (25 bp)
TCAAAATGTTGGTTCCTGTCTGGAA
LOC_Os05g07260
Os.24661.1.S1_at--10--3871Chr05:3820792..3820816 (25 bp)
CTGTCTGGAAGGCTCTCTGCAAATT
LOC_Os05g07260
Os.24661.1.S1_at--1087--6351Chr05:3820828..3820852 (25 bp)
GATGCCAAACCAGTTCTGCAGTTTC
LOC_Os05g07260
Os.24661.1.S1_at--81--5431Chr05:3820859..3820883 (25 bp)
GAACCGTTCGGAAACATGACCAATT
LOC_Os05g07260
Os.24661.1.S1_at--981--6312Chr11:16672577..16672929 (25 bp)
GATGCACTTCACTTCACTTAACAGT
NONE
Os.24661.1.S1_at--808--9811Chr05:3821152..3821176 (25 bp)
TAACATTGTTCTGCTATTACCATTC
LOC_Os05g07260
Target Sequence 
AGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACT
GGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTG
GTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTC
GGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCT
AGGTGCATTTTATTTGGAACTATCTGGTGGGGGTTGTAGGACACGCTAATGCAAGTGGCACATCTTATTGGAAGGAAATA
CGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTA
AATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCTATTACCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis