Browse Element(s) Details


OsAffx.16673.1.S1_s_at

Description tigr:9635.m04137
TID=OsAffx.16673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4135011/11B12D protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16673.1.S1_s_at--544--7711Chr07:24767007..24767031 (25 bp)
GGGTGAACAAGAGCCACCGCCAGAG
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--197--4071Chr07:24767053..24767077 (25 bp)
CGAGGGGGAGAAGTATCACCACCAC
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--471--4511Chr07:24767106..24767130 (25 bp)
GCCCCGAGGTCTTCCCGGCGATCAA
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--170--6991Chr07:24767156..24767180 (25 bp)
GTCCCCAAGAGTGACCGTCAAAACT
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--127--6091Chr07:24767164..24767188 (25 bp)
GAGTGACCGTCAAAACTGATCCTCC
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--750--7371Chr07:24767166..24767190 (25 bp)
GTGACCGTCAAAACTGATCCTCCAA
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--237--8931Chr07:24767167..24767191 (25 bp)
TGACCGTCAAAACTGATCCTCCAAA
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--275--1751Chr07:24767169..24767193 (25 bp)
ACCGTCAAAACTGATCCTCCAAATG
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--1085--4211Chr07:24767202..24767226 (25 bp)
CCGCTATATAGTAATGTACTCCTAT
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--1047--3131Chr07:24767279..24767303 (25 bp)
AATTACTGAGTTTTGTTACTGGATA
LOC_Os07g41350
OsAffx.16673.1.S1_s_at--1032--6791Chr07:24767288..24767312 (25 bp)
GTTTTGTTACTGGATATGTGTCGCA
LOC_Os07g41350
Target Sequence 
GGGTGAACAAGAGCCACCGCCAGAGCGCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCTTCCGC
CGATTCCTCGGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCGCCGGCCCGGCCACCGTCCCCAAGAG
TGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAG
AGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16673.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis