Browse Element(s) Details


Os.4573.1.S1_at

Description gb:AF091458.1
DB_XREF= gi:6175370
GEN=MADS18
TID=Os.4573.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4573 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS box transcription factor MADS18 (MADS18) mRNA, complete cds.
PROD=MADS box transcription factor MADS18
FL= gb:AF091458.1 gb:AK064704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4137010/11MADS-box transcription factor 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4573.1.S1_at--246--8071Chr07:24791145..24791169 (25 bp)
GGAGCAACACCAAGCACATCATCAC
LOC_Os07g41370
Os.4573.1.S1_at--197--551Chr07:24791191..24791215 (25 bp)
ATCCCATCCCGACAACAAATAACAG
LOC_Os07g41370
Os.4573.1.S1_at--554--5151Chr07:24791689..24791713 (25 bp)
GCAACAGCAAGCTTCCGCCATGGAT
LOC_Os07g41370
Os.4573.1.S1_at--1108--8551Chr07:24791709..24791733 (25 bp)
TGGATGCTCCGGACAAGTCACACAT
LOC_Os07g41370
Os.4573.1.S1_at--880--5271NONE
GAAGGCCATCTGTTGATCTCAAACG
NONE
Os.4573.1.S1_at--106--751Chr07:24791785..24791809 (25 bp)
ATGTTTCTTCCAACTAAGGCAGCCA
LOC_Os07g41370
Os.4573.1.S1_at--742--2931Chr07:24791800..24791824 (25 bp)
AAGGCAGCCACTGTTGTGCAATCCA
LOC_Os07g41370
Os.4573.1.S1_at--551--7351Chr07:24791815..24791839 (25 bp)
GTGCAATCCATCTTCCAGCGATATT
LOC_Os07g41370
Os.4573.1.S1_at--410--10771Chr07:24791838..24791862 (25 bp)
TTGATATATCGGCATTCGGCATAGC
LOC_Os07g41370
Os.4573.1.S1_at--381--431Chr07:24791884..24791908 (25 bp)
ATCTTGTCAAAGCTTCATAGGGTTA
LOC_Os07g41370
Os.4573.1.S1_at--1125--10491Chr07:24791906..24791930 (25 bp)
TTAATGACGCCTTGAGCTTCTCTGT
LOC_Os07g41370
Target Sequence 
GGAGCAACACCAAGCACATCATCACCAACACCAGTGACGGCTCCAGATCCCATCCCGACAACAAATAACAGTCAAAGCCA
ACCAAGAGGATCAGGGGAGTCAGAAGCTCAACCGTCTCCGGCACAAGCAGGCAACAGCAAGCTTCCGCCATGGATGCTCC
GGACAAGTCACACATGAAGGCCATCTGTTGATCTCAAACGTCACTCCACTCAATGGCCAACATCAACATGTTTCTTCCAA
CTAAGGCAGCCACTGTTGTGCAATCCATCTTCCAGCGATATTGATATATCGGCATTCGGCATAGCCAATATATATTAATG
TAATGTATCTTGTCAAAGCTTCATAGGGTTAATGACGCCTTGAGCTTCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis