Browse Element(s) Details


Os.5451.1.S1_at

Description gb:AK061294.1
DB_XREF= gi:32971312
TID=Os.5451.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D01, full insert sequence.
FL= gb:AK061294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4136011/11Alpha-1,4-glucan-protein synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0000138cellular_componentGolgi trans cisterna
GO:0005795cellular_componentGolgi stack
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5451.1.S1_at--620--8491Chr07:24774246..24774270 (25 bp)
TGGGTGTTAAGACTGGCCTTCCCTA
LOC_Os07g41360
Os.5451.1.S1_at--309--4111Chr07:24774378..24774402 (25 bp)
CGAAGGAGGCCGACACTGTCCAGAA
LOC_Os07g41360
Os.5451.1.S1_at--25--1471Chr07:24774399..24774423 (25 bp)
AGAAGTGTTACCTTGAGCTGGCCAA
LOC_Os07g41360
Os.5451.1.S1_at--854--7091Chr07:24774485..24774509 (25 bp)
GTCACATGGATTGAGGCCTGGGATC
LOC_Os07g41360
Os.5451.1.S1_at--673--3291Chr07:24774522..24774546 (25 bp)
CAAAGGGAGCTGTTGCCACCGCAAA
LOC_Os07g41360
Os.5451.1.S1_at--1086--2411Chr07:24774584..24774608 (25 bp)
AAAACTTCGTTTGTTCATGTGAACT
LOC_Os07g41360
Os.5451.1.S1_at--494--7311Chr07:24774647..24774671 (25 bp)
GTGCTGATTGAACTGAGATCGCTTC
LOC_Os07g41360
Os.5451.1.S1_at--490--531Chr07:24774664..24774688 (25 bp)
ATCGCTTCAGCGTTGTAACTTCAAA
LOC_Os07g41360
Os.5451.1.S1_at--833--8731Chr07:24774677..24774701 (25 bp)
TGTAACTTCAAATGTGTCACCTCCC
LOC_Os07g41360
Os.5451.1.S1_at--830--2611Chr07:24774707..24774731 (25 bp)
AACCGTCCTGGCTGTTCTATGGTAT
LOC_Os07g41360
Os.5451.1.S1_at--1035--7091Chr07:24774776..24774800 (25 bp)
GTCAGGATCGAATCACCTTCAAATT
LOC_Os07g41360
Target Sequence 
TGGGTGTTAAGACTGGCCTTCCCTACATCTGGCACAGCAAANCGAGCAACCCNTTTGTGAACCTCAAGAAGGAATACAAC
GGCATATTCTGGCAGGAGGAGCTGATCCCCTTNTTCCNGTCTGCNTCCCTCCCGAAGGAGGCCGACACTGTCCAGAAGTG
TTACCTTGAGCTGGCCAAGCAAGTGAGGGCGAAGCTCGGGAAGGTCGATGGCTACTTCAACAAGCTCGCCGACTCCATGG
TCACATGGATTGAGGCCTGGGATCAGCTGAACCCACCAAAGGGAGCTGTTGCCACCGCAAACGGCACTGCCAAGAGCAAG
TGAGAGGGCGGTAGTATAAAAACTTCGTTTGTTCATGTGAACTGCTTATACTGAAATACCGAAATACTTTTGGTTTTGTT
AGTGCTGATTGAACTGAGATCGCTTCAGCGTTGTAACTTCAAATGTGTCACCTCCCTGGACAACCGTCCTGGCTGTTCTA
TGGTATTTACAANTTTTTTTTTCTTTTTGGTGTGATGAAACAGTTGTAATGTCAGGATCGAATCACCTTCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis