Browse Element(s) Details


OsAffx.20135.1.A1_at

Description gb:NM_197737.1
DB_XREF= gi:37536833
TID=OsAffx.20135.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0042H09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g414202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41439NANA7+24830995..24831751hypothetical protein
LOC_Os07g41448NANA7+24836755..24837511hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20135.1.A1_at--514--2552Chr10:21737118..21737142 (25 bp)
AACTCCCATGTGGTCGCGTCGTTGT
NONE
OsAffx.20135.1.A1_at--1114--4332Chr10:21737123..21737147 (25 bp)
CCATGTGGTCGCGTCGTTGTCGGCC
NONE
OsAffx.20135.1.A1_at--628--10812Chr10:21737139..21737163 (25 bp)
TTGTCGGCCGGCTCGGCACGCTGAC
NONE
OsAffx.20135.1.A1_at--847--3251Chr10:21737218..21737242 (25 bp)
CAACGCCGTCGCCGCAGGTGCAGAA
NONE
OsAffx.20135.1.A1_at--723--5031Chr10:21737237..21737261 (25 bp)
GCAGAAGAAGCCACCGTCGGATGCT
NONE
OsAffx.20135.1.A1_at--417--2751Chr10:21737241..21737265 (25 bp)
AAGAAGCCACCGTCGGATGCTGCCA
NONE
OsAffx.20135.1.A1_at--799--971Chr10:21737274..21737298 (25 bp)
AGGATGCCGACATGAGTCCGGTGAC
NONE
OsAffx.20135.1.A1_at--12--611Chr10:21737277..21737301 (25 bp)
ATGCCGACATGAGTCCGGTGACGAG
NONE
OsAffx.20135.1.A1_at--1045--7751Chr10:21737293..21737317 (25 bp)
GGTGACGAGACGCACAGCCCTTATG
NONE
OsAffx.20135.1.A1_at--1003--5111Chr10:21737304..21737328 (25 bp)
GCACAGCCCTTATGCGTTCGTGGGC
NONE
OsAffx.20135.1.A1_at--568--5791Chr10:21737441..21737465 (25 bp)
GACGCGGCCGTTTCTCGTGGCCCGT
NONE
Target Sequence 
AACTCCCATGTGGTCGCGTCGTTGTCGGCCGGCTCGGCACGCTGACCGCGTCCATCAGCGGTACCACCGCCTCCCCCGCC
CGCGCTGCTCCTCCCACTTTCAACGCCGTCGCCGCAGGTGCAGAAGAAGCCACCGTCGGATGCTGCCATCTTCGAGAGGA
TGCCGACATGAGTCCGGTGACGAGACGCACAGCCCTTATGCGTTCGTGGGCGCGGCGGGAGAACGGCAGAGGCGGGTGCG
TCGTGGCCGGCAGAGAAGGCGTGGAGCGCAGCGGTGGATAGTGCGGTGGCGGGGCCGAGGGTGGCGAGGCCGAGGATGGC
GAGGACGCGGCCGTTTCTCGTGGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20135.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis