Browse Element(s) Details


Os.53131.1.S1_at

Description gb:AK070951.1
DB_XREF= gi:32980974
TID=Os.53131.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075G04, full insert sequence.
FL= gb:AK070951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4350011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53131.1.S1_at--432--3611Chr08:27380115..27380139 (25 bp)
CATTGGTGAACCTCCTCGACGAGAG
LOC_Os08g43500
Os.53131.1.S1_at--325--5111Chr08:27380190..27380214 (25 bp)
GCACGGAGAACTACCTCCATGTCGA
LOC_Os08g43500
Os.53131.1.S1_at--594--771Chr08:27380208..27380232 (25 bp)
ATGTCGACCACTCCAAGGCGATCAT
LOC_Os08g43500
Os.53131.1.S1_at--679--9671Chr08:27380370..27380394 (25 bp)
TCACCTTGCTCGAGTGGGCATCAAA
LOC_Os08g43500
Os.53131.1.S1_at--273--7491Chr08:27380383..27380407 (25 bp)
GTGGGCATCAAAGCAAGCGGCCATG
LOC_Os08g43500
Os.53131.1.S1_at--914--2671Chr08:27380397..27380421 (25 bp)
AAGCGGCCATGGTGCAAGATCCATT
LOC_Os08g43500
Os.53131.1.S1_at--394--6371Chr08:27380414..27380438 (25 bp)
GATCCATTGATCGAGAACTTGTTGC
LOC_Os08g43500
Os.53131.1.S1_at--143--7871Chr08:27380486..27380510 (25 bp)
GGTTACTACTGAGATGCACGGTTTT
LOC_Os08g43500
Os.53131.1.S1_at--256--3231Chr08:27380545..27380569 (25 bp)
CAAGATGATGGACCGGCTTCTTCTT
LOC_Os08g43500
Os.53131.1.S1_at--52--6671Chr08:27380586..27380610 (25 bp)
GTTGCATCAACCAGCTGACTACTGT
LOC_Os08g43500
Os.53131.1.S1_at--959--1331Chr08:27380687..27380711 (25 bp)
AGAGATTGATTTTGTCCCGGGCATC
LOC_Os08g43500
Target Sequence 
CATTGGTGAACCTCCTCGACGAGAGGGAAGCCGACGTCAGCCGGGAGGCGGCCGCCGCGCTCACCAAGTTCGCCTGCACG
GAGAACTACCTCCATGTCGACCACTCCAAGGCGATCATCCACCATGGCGGCGCCAAGCACCTCGTCCAGCTCGTCTACTT
CGCCGAGCAGGCCGTCCAGATCGCCGCGCTCCTCCTCGTGTGCTACATTGCGCACAACGTCCCCGACAACGAGGAGCTCG
CGCAAGCGGAGATCCTCACCTTGCTCGAGTGGGCATCAAAGCAAGCGGCCATGGTGCAAGATCCATTGATCGAGAACTTG
TTGCTGGAGGCCAAGATTAGAATGGAGCTCTACCAATCCAGAGGGGCAAAAGGTTACTACTGAGATGCACGGTTTTGATG
CAGAAAGAGGCACATGTAGGATGATACTACCAAGATGATGGACCGGCTTCTTCTTCTTCGTCGTCGTCTTCGTTGCATCA
ACCAGCTGACTACTGTATATATATTCAGGTGTTTTTTGGTTGACTTGAATTGAATTGTTGATGCAATCAGTTGGATTCCA
TGTTTGGTTGGAAGAGATTGATTTTGTCCCGGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis