Browse Element(s) Details


Os.54593.1.S1_at

Description gb:AK106054.1
DB_XREF= gi:32991263
TID=Os.54593.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F06, full insert sequence.
FL= gb:AK106054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4343011/11pepper esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43410NANA8+27325466..27327091expressed protein
LOC_Os08g43420OsAffx.6124.1.S1_at11/118+27327799..27328128hypothetical protein
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54593.1.S1_at--686--4551Chr08:27341425..27341449 (25 bp)
GCGCCGACCAGGACCACGAGTTCAG
LOC_Os08g43430
Os.54593.1.S1_at--191--1871Chr08:27341410..27341434 (25 bp)
ACGAGTTCAGCAACCCGGCGAAGTC
LOC_Os08g43430
Os.54593.1.S1_at--739--8371Chr08:27341324..27341348 (25 bp)
GGCGACCCGCTGATCGACAGGCAGA
LOC_Os08g43430
Os.54593.1.S1_at--206--8391Chr08:27341156..27341180 (25 bp)
GGCGACGTCGTCCACAGTTGATGAT
LOC_Os08g43430
Os.54593.1.S1_at--126--3451Chr08:27341142..27341166 (25 bp)
CAGTTGATGATGACGTACGCATGCA
LOC_Os08g43430
Os.54593.1.S1_at--209--1851Chr08:27341126..27341150 (25 bp)
ACGCATGCAAAAGTCTGTGTGTCAC
LOC_Os08g43430
Os.54593.1.S1_at--97--8651Chr08:27341111..27341135 (25 bp)
TGTGTGTCACTATCACCGTATGGAC
LOC_Os08g43430
Os.54593.1.S1_at--69--5611Chr08:27341089..27341113 (25 bp)
GACAATAATAATCCGGCACTGCATT
LOC_Os08g43430
Os.54593.1.S1_at--616--7111Chr08:27341040..27341064 (25 bp)
GTCAGTTGGTACGTGCAGCTAGCTA
LOC_Os08g43430
Os.54593.1.S1_at--532--10371Chr08:27340988..27341012 (25 bp)
TTTTTTGTGAACTCGGTGCTTGATT
LOC_Os08g43430
Os.54593.1.S1_at--975--652Chr08:27340942..27340966 (25 bp)
ATGCAAATGATGTACTCCCTCCGGT
LOC_Os08g43430
Target Sequence 
GCGCCGACCAGGACCACGAGTTCAGCAACCCGGCGAAGTCGATGGCGGCGGCGGCGGCGGCGTTGACCGGGCTGCCTCGG
TGCCTGGTCACCGGGAGCGACGGCGACCCGCTGATCGACAGGCAGAGGGAGCTGGTCGCGTGGCTGCGGGGGCACGGCGT
GGAGGTCGTCGCGAAGACGGACTTCGCCGGGTCCCACGCGGCGGAGCTGTTCGTGAAGGAGACGGCCGACGAGCTCTTCG
CGGCGGTGTGCGCGTTCGTGTCCGGCGCCGGCGACGTCGTCCACAGTTGATGATGACGTACGCATGCAAAAGTCTGTGTG
TCACTATCACCGTATGGACAATAATAATCCGGCACTGCATTGATTGCACTGATGATGGTGGATGAGTCAGTTGGTACGTG
CAGCTAGCTAGCTGCCGTGGCGGTGCTTGATTTTTTTTTTTTTTGTGAACTCGGTGCTTGATTAATTGCTTGTTGATTTG
CATAATGCAAATGATGTACTCCCTCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis