Browse Element(s) Details


OsAffx.24395.1.S1_at

Description tigr:9630.m02217
TID=OsAffx.24395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2390010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23870Os.27140.1.S1_a_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S1_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S2_at8/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.30316.1.S1_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.10048.1.S1_x_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23880OsAffx.2719.1.S1_at11/112+13827699..13828785hypothetical protein
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein
LOC_Os02g23920OsAffx.24397.1.S1_at11/112+13855114..13855485hypothetical protein
LOC_Os02g23930OsAffx.12164.1.S1_at11/112+13856434..13858652expressed protein
LOC_Os02g23940OsAffx.2720.1.S1_x_at11/112+13859853..13861452hypothetical protein
LOC_Os02g23940OsAffx.2720.1.S1_at10/112+13859853..13861452hypothetical protein
LOC_Os02g23950NANA2+13870417..13871329transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24395.1.S1_at--794--10671Chr02:13848072..13848163 (25 bp)
TTCCACGAGGTCATGAGACATTGCA
LOC_Os02g23900
OsAffx.24395.1.S1_at--269--9011Chr02:13848051..13848075 (25 bp)
TGCACAATTTGGTTGATGAAGCCCT
LOC_Os02g23900
OsAffx.24395.1.S1_at--243--4552Chr12:17764204..17764610 (25 bp)
GCCCTCTTGCTAAAGGAGGCCAGGA
NONE
OsAffx.24395.1.S1_at--711--9571Chr12:17764208..17764614 (25 bp)
TCTTGCTAAAGGAGGCCAGGAGTTG
NONE
OsAffx.24395.1.S1_at--802--8531Chr02:13847562..13847586 (25 bp)
TGGAGCCATGCAAACTTGCCTTATG
LOC_Os02g23900
OsAffx.24395.1.S1_at--688--4411Chr02:13847558..13847582 (25 bp)
GCCATGCAAACTTGCCTTATGCTAA
LOC_Os02g23900
OsAffx.24395.1.S1_at--1019--2051Chr02:13847549..13847573 (25 bp)
ACTTGCCTTATGCTAATGTCTTCGG
LOC_Os02g23900
OsAffx.24395.1.S1_at--452--9191Chr02:13847546..13847570 (25 bp)
TGCCTTATGCTAATGTCTTCGGGAG
LOC_Os02g23900
OsAffx.24395.1.S1_at--763--611Chr02:13847540..13847564 (25 bp)
ATGCTAATGTCTTCGGGAGCTTTAA
LOC_Os02g23900
OsAffx.24395.1.S1_at--399--2991Chr02:13847535..13847559 (25 bp)
AATGTCTTCGGGAGCTTTAAGATTA
LOC_Os02g23900
OsAffx.24395.1.S1_at--438--3971Chr02:13847527..13847551 (25 bp)
CGGGAGCTTTAAGATTAGGCCCTGC
LOC_Os02g23900
Target Sequence 
TTCCACGAGGTCATGAGACATTGCACAATTTGGTTGATGAAGCCCTCTTGCTAAAGGAGGCCAGGAGTTGGAGCCATGCA
AACTTGCCTTATGCTAATGTCTTCGGGAGCTTTAAGATTAGGCCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis