Browse Element(s) Details


OsAffx.24396.1.S1_at

Description tigr:9630.m02218
TID=OsAffx.24396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2391011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23880OsAffx.2719.1.S1_at11/112+13827699..13828785hypothetical protein
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein
LOC_Os02g23920OsAffx.24397.1.S1_at11/112+13855114..13855485hypothetical protein
LOC_Os02g23930OsAffx.12164.1.S1_at11/112+13856434..13858652expressed protein
LOC_Os02g23940OsAffx.2720.1.S1_x_at11/112+13859853..13861452hypothetical protein
LOC_Os02g23940OsAffx.2720.1.S1_at10/112+13859853..13861452hypothetical protein
LOC_Os02g23950NANA2+13870417..13871329transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24396.1.S1_at--436--511Chr02:13849116..13849140 (25 bp)
ATCGAGCTCGAGATGCACCTTCTCC
LOC_Os02g23910
OsAffx.24396.1.S1_at--252--9371Chr02:13849123..13849147 (25 bp)
TCGAGATGCACCTTCTCCGCAAGCT
LOC_Os02g23910
OsAffx.24396.1.S1_at--364--9251Chr02:13849147..13849171 (25 bp)
TCCTTCAGGAGAAGCCACCGCAGGA
LOC_Os02g23910
OsAffx.24396.1.S1_at--872--10531Chr02:13849150..13849174 (25 bp)
TTCAGGAGAAGCCACCGCAGGATCT
LOC_Os02g23910
OsAffx.24396.1.S1_at--296--5971Chr02:13849155..13849179 (25 bp)
GAGAAGCCACCGCAGGATCTCACCG
LOC_Os02g23910
OsAffx.24396.1.S1_at--429--9311Chr02:13849213..13849237 (25 bp)
TCCCGCTCATCGAGATGTTTGACTT
LOC_Os02g23910
OsAffx.24396.1.S1_at--329--4831Chr02:13849217..13849241 (25 bp)
GCTCATCGAGATGTTTGACTTGGGT
LOC_Os02g23910
OsAffx.24396.1.S1_at--983--9371Chr02:13849222..13849246 (25 bp)
TCGAGATGTTTGACTTGGGTGCAGC
LOC_Os02g23910
OsAffx.24396.1.S1_at--843--8751Chr02:13849228..13849252 (25 bp)
TGTTTGACTTGGGTGCAGCGAGGAG
LOC_Os02g23910
OsAffx.24396.1.S1_at--552--771Chr02:13849259..13849283 (25 bp)
ATGGGTGGCGGACAGTGGCGGATCC
LOC_Os02g23910
OsAffx.24396.1.S1_at--234--3954Chr05:7959828..7959851 (24 bp)
CGGATCCAGAAAATCAGTTTGTTGG
NONE
Target Sequence 
ATCGAGCTCGAGATGCACCTTCTCCGCAAGCTCCTTCAGGAGAAGCCACCGCAGGATCTCACCGCCGTCACCGAGATGGA
GAGCCCCATCCACATGATCCCGCTCATCGAGATGTTTGACTTGGGTGCAGCGAGGAGGAGGAGATGGGTGGCGGACAGTG
GCGGATCCAGAAAATCAGTTTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis