Browse Element(s) Details


OsAffx.7476.1.S1_at

Description tigr:9640.m00289
TID=OsAffx.7476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0375011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7476.1.S1_at--1014--1251Chr12:1525041..1525065 (25 bp)
AGATTTTCCTGATTGGGTGTGTCCA
LOC_Os12g03750
OsAffx.7476.1.S1_at--745--10731Chr12:1525097..1525121 (25 bp)
TTGAAAGCTACCACTTCTTGTCTAC
LOC_Os12g03750
OsAffx.7476.1.S1_at--981--31Chr12:1525131..1525155 (25 bp)
ATTGGGCCATCTGCCTTTGCTAAAG
LOC_Os12g03750
OsAffx.7476.1.S1_at--768--2571Chr12:1525195..1525219 (25 bp)
AACGGCACATCATTCGGTGGTTTCC
LOC_Os12g03750
OsAffx.7476.1.S1_at--70--6851Chr12:1525214..1525238 (25 bp)
GTTTCCCATCTCTTGAGGAGTTCGA
LOC_Os12g03750
OsAffx.7476.1.S1_at--159--991Chr12:1525229..1525253 (25 bp)
AGGAGTTCGAGCTTCATTCAATGGA
LOC_Os12g03750
OsAffx.7476.1.S1_at--233--5071Chr12:1525285..1525309 (25 bp)
GCAGCTCATGCTTATGGGTTGTCGC
LOC_Os12g03750
OsAffx.7476.1.S1_at--58--951Chr12:1525327..1525351 (25 bp)
AGGAAGCTCCATCTTGCATACTGTC
LOC_Os12g03750
OsAffx.7476.1.S1_at--29--4971Chr12:1525342..1525366 (25 bp)
GCATACTGTCCATCACTGAGACGTT
LOC_Os12g03750
OsAffx.7476.1.S1_at--541--731Chr12:1525447..1525471 (25 bp)
ATGTTCTCAAGTCTTGTCATCCCTA
LOC_Os12g03750
OsAffx.7476.1.S1_at--964--7111Chr12:1525462..1525486 (25 bp)
GTCATCCCTAATAACCTTGGCAGTC
LOC_Os12g03750
Target Sequence 
AGATTTTCCTGATTGGGTGTGTCCAGATAACTTGGTTAATCTCTTACAGGTAAATCTTGAAAGCTACCACTTCTTGTCTA
CCATTCCACCATTGGGCCATCTGCCTTTGCTAAAGCTCCTCACCCTAAGAAAGCTTCCCTCAGTGAAGCATGCCAACGGC
ACATCATTCGGTGGTTTCCCATCTCTTGAGGAGTTCGAGCTTCATTCAATGGAGAAATGGGAGGAGTGGACAGAACCAGA
TGCAGCAGCTCATGCTTATGGGTTGTCGCTTTTCCTTGGACACCTCAGGAAGCTCCATCTTGCATACTGTCCATCACTGA
GACGTTTCCCGCATCTTCCATGCTTTATCTGCATTGAAAGAGCTGAAGATCTCCAAGCCTGGAAGCTGGATCCTGGCATT
ACCAGCATGTTCTCAAGTCTTGTCATCCCTAATAACCTTGGCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis