Browse Element(s) Details


OsAffx.2479.1.S1_at

Description tigr:9630.m00073
TID=OsAffx.2479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01710Os.18186.1.S1_at11/112+391819..395616expressed protein
LOC_Os02g01720Os.20935.1.S1_at9/112+397365..403429expressed protein
LOC_Os02g01720OsAffx.28164.2.S1_at3/112+397365..403429expressed protein
LOC_Os02g01720Os.46481.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01720Os.52574.2.S1_x_at1/112+397365..403429expressed protein
LOC_Os02g01730NANA2+404247..406672Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os02g01740Os.17297.1.S1_at11/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01740OsAffx.24051.1.S1_x_at9/112+410661..418491U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
LOC_Os02g01750OsAffx.2479.1.S1_at11/112+419393..420208hypothetical protein
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2479.1.S1_at--677--8191Chr02:419959..419983 (25 bp)
GGAAGTTCATCCTGTGTTGGTGCAT
LOC_Os02g01750
OsAffx.2479.1.S1_at--159--1231Chr02:419956..419980 (25 bp)
AGTTCATCCTGTGTTGGTGCATTGC
LOC_Os02g01750
OsAffx.2479.1.S1_at--1124--4751Chr02:419924..419948 (25 bp)
GCTGCAATACGCCTTGTTCTGGAGC
LOC_Os02g01750
OsAffx.2479.1.S1_at--708--3091Chr02:419919..419943 (25 bp)
AATACGCCTTGTTCTGGAGCCGCAT
LOC_Os02g01750
OsAffx.2479.1.S1_at--796--6711Chr02:419909..419933 (25 bp)
GTTCTGGAGCCGCATGGAAGTCATC
LOC_Os02g01750
OsAffx.2479.1.S1_at--849--5871Chr02:419903..419927 (25 bp)
GAGCCGCATGGAAGTCATCGATGTA
LOC_Os02g01750
OsAffx.2479.1.S1_at--471--7131Chr02:419890..419914 (25 bp)
GTCATCGATGTAGCCGAGGATCTTG
LOC_Os02g01750
OsAffx.2479.1.S1_at--1047--4051Chr02:419885..419909 (25 bp)
CGATGTAGCCGAGGATCTTGTCCAA
LOC_Os02g01750
OsAffx.2479.1.S1_at--918--9571Chr02:419870..419894 (25 bp)
TCTTGTCCAAGTAGATCGCGGCGAT
LOC_Os02g01750
OsAffx.2479.1.S1_at--338--1451Chr02:419841..419865 (25 bp)
AGAAGACAGCAAGGGCCCTGTTCGG
LOC_Os02g01750
OsAffx.2479.1.S1_at--772--1891Chr02:419793..419817 (25 bp)
ACGTCCAGGGCAGAGAAGATGCCGA
LOC_Os02g01750
Target Sequence 
GGAAGTTCATCCTGTGTTGGTGCATTGCTGCTGCTGCTGCAATACGCCTTGTTCTGGAGCCGCATGGAAGTCATCGATGT
AGCCGAGGATCTTGTCCAAGTAGATCGCGGCGATGGTGAGAAGACAGCAAGGGCCCTGTTCGGTGGCGGTGTTAGCGGCC
ACGACGACGTCCAGGGCAGAGAAGATGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis