Browse Element(s) Details


OsAffx.30995.1.S1_at

Description tigr:9639.m01447
TID=OsAffx.30995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1558010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein
LOC_Os11g15600OsAffx.18869.1.S1_at11/1111+8849548..8850804hypothetical protein
LOC_Os11g15610OsAffx.18870.1.S1_at9/1111+8852109..8853271hypothetical protein
LOC_Os11g15620OsAffx.18871.1.S1_at11/1111+8855011..8857361F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30995.1.S1_at--1078--9031Chr11:8831473..8831497 (25 bp)
TGCTTGGAACAGAGGACGACGGCGG
LOC_Os11g15580
OsAffx.30995.1.S1_at--965--7631NONE
GGGACGACAACAAGGAAGTCTGCAA
NONE
OsAffx.30995.1.S1_at--1065--2191Chr11:8831522..8831924 (25 bp)
ACAACAAGGAAGTCTGCAACAATCA
LOC_Os11g15580
OsAffx.30995.1.S1_at--1124--8191Chr11:8831907..8831931 (25 bp)
GGAAGTCTGCAACAATCAACTGACA
LOC_Os11g15580
OsAffx.30995.1.S1_at--295--2451Chr11:8831917..8831941 (25 bp)
AACAATCAACTGACAAACACACGGT
LOC_Os11g15580
OsAffx.30995.1.S1_at--941--2191Chr11:8831929..8831953 (25 bp)
ACAAACACACGGTCACTGCAAACTG
LOC_Os11g15580
OsAffx.30995.1.S1_at--255--2411Chr11:8831931..8831955 (25 bp)
AAACACACGGTCACTGCAAACTGCC
LOC_Os11g15580
OsAffx.30995.1.S1_at--427--7831Chr11:8831939..8831963 (25 bp)
GGTCACTGCAAACTGCCCAACGAAT
LOC_Os11g15580
OsAffx.30995.1.S1_at--198--9691Chr11:8831941..8831965 (25 bp)
TCACTGCAAACTGCCCAACGAATGG
LOC_Os11g15580
OsAffx.30995.1.S1_at--598--2551Chr11:8831949..8831973 (25 bp)
AACTGCCCAACGAATGGCATCTTGG
LOC_Os11g15580
OsAffx.30995.1.S1_at--1012--9151Chr11:8831952..8831976 (25 bp)
TGCCCAACGAATGGCATCTTGGTAT
LOC_Os11g15580
Target Sequence 
TGCTTGGAACAGAGGACGACGGCGGGGTTGACGGTTCGGAACGGGGACGACAACAAGGAAGTCTGCAACAATCAACTGAC
AAACACACGGTCACTGCAAACTGCCCAACGAATGGCATCTTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis