Browse Element(s) Details


OsAffx.30982.1.S1_at

Description tigr:9639.m01377
TID=OsAffx.30982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14850OsAffx.20823.2.S1_x_at1/1111+8351921..8353929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30982.1.S1_at--940--8031Chr11:8371800..8371824 (25 bp)
GGAGTACCGAAGATGTCGGCACTCT
LOC_Os11g14890
OsAffx.30982.1.S1_at--1119--6971Chr11:8371797..8371821 (25 bp)
GTACCGAAGATGTCGGCACTCTCTT
LOC_Os11g14890
OsAffx.30982.1.S1_at--1152--2791Chr11:8371791..8371815 (25 bp)
AAGATGTCGGCACTCTCTTCAATTT
LOC_Os11g14890
OsAffx.30982.1.S1_at--1122--8711Chr11:8371787..8371811 (25 bp)
TGTCGGCACTCTCTTCAATTTTGTA
LOC_Os11g14890
OsAffx.30982.1.S1_at--785--10471Chr11:8371197..8371221 (25 bp)
TTACACGATATGGATCAATCATGGC
LOC_Os11g14890
OsAffx.30982.1.S1_at--90--4051Chr11:8371192..8371216 (25 bp)
CGATATGGATCAATCATGGCGAGCA
LOC_Os11g14890
OsAffx.30982.1.S1_at--972--1471Chr11:8371171..8371195 (25 bp)
AGCAAAAAGTGGATCTCGATGACAA
LOC_Os11g14890
OsAffx.30982.1.S1_at--63--2871Chr11:8371165..8371189 (25 bp)
AAGTGGATCTCGATGACAAAGAAGA
LOC_Os11g14890
OsAffx.30982.1.S1_at--884--2791Chr11:8371144..8371168 (25 bp)
AAGATCGATCGGATGTTGATCACAT
LOC_Os11g14890
OsAffx.30982.1.S1_at--6--731Chr11:8371132..8371156 (25 bp)
ATGTTGATCACATGGATTCTGTTGA
LOC_Os11g14890
OsAffx.30982.1.S1_at--1010--10771Chr11:8371129..8371153 (25 bp)
TTGATCACATGGATTCTGTTGATGG
LOC_Os11g14890
Target Sequence 
GGAGTACCGAAGATGTCGGCACTCTCTTCAATTTTGTATCTTGATAGATACTTATTTTATAATTACACGATATGGATCAA
TCATGGCGAGCAAAAAGTGGATCTCGATGACAAAGAAGATCGATCGGATGTTGATCACATGGATTCTGTTGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis