Browse Element(s) Details


OsAffx.7112.1.S1_at

Description tigr:9639.m01376
TID=OsAffx.7112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1488011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14840NANA11+8341968..8345057hypothetical protein
LOC_Os11g14850OsAffx.20823.2.S1_x_at1/1111+8351921..8353929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7112.1.S1_at--555--10531Chr11:8368328..8368352 (25 bp)
TTCATCAGGGTGCAGCGTCCAGTTC
LOC_Os11g14880
OsAffx.7112.1.S1_at--63--4011Chr11:8368343..8368367 (25 bp)
CGTCCAGTTCCCACATTTTTGTGTA
LOC_Os11g14880
OsAffx.7112.1.S1_at--764--10351Chr11:8368359..8368383 (25 bp)
TTTTGTGTACCCCAAACAGTCCCTG
LOC_Os11g14880
OsAffx.7112.1.S1_at--799--2491Chr11:8368373..8368397 (25 bp)
AACAGTCCCTGTTGCGAGGCGGTGA
LOC_Os11g14880
OsAffx.7112.1.S1_at--283--7611Chr11:8368413..8368437 (25 bp)
GGGACATGCACTGTGTGTATTTCCT
LOC_Os11g14880
OsAffx.7112.1.S1_at--326--5111Chr11:8368420..8368444 (25 bp)
GCACTGTGTGTATTTCCTAATTGGA
LOC_Os11g14880
OsAffx.7112.1.S1_at--1082--10651Chr11:8368433..8368457 (25 bp)
TTCCTAATTGGATTGGACAAGCAGA
LOC_Os11g14880
OsAffx.7112.1.S1_at--569--3231Chr11:8368450..8368474 (25 bp)
CAAGCAGAGGGTGAAGCTGTACAGT
LOC_Os11g14880
OsAffx.7112.1.S1_at--493--1611Chr11:8368464..8368488 (25 bp)
AGCTGTACAGTGAACGAATGATCCT
LOC_Os11g14880
OsAffx.7112.1.S1_at--909--5271Chr11:8368479..8368503 (25 bp)
GAATGATCCTGCGTCTCAGTGATCT
LOC_Os11g14880
OsAffx.7112.1.S1_at--1047--7151Chr11:8368491..8368515 (25 bp)
GTCTCAGTGATCTCTGCGCGCCGGT
LOC_Os11g14880
Target Sequence 
TTCATCAGGGTGCAGCGTCCAGTTCCCACATTTTTGTGTACCCCAAACAGTCCCTGTTGCGAGGCGGTGAGGAAGGTGCG
GGACAGGGACATGCACTGTGTGTATTTCCTAATTGGATTGGACAAGCAGAGGGTGAAGCTGTACAGTGAACGAATGATCC
TGCGTCTCAGTGATCTCTGCGCGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis