Browse Element(s) Details


OsAffx.21779.2.S1_at

Description gb:NM_195577.1
DB_XREF= gi:37532513
TID=OsAffx.21779.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034E23.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1652011/11retrotransposon protein, putative, unclassified
LOC_Os04g138806/11retrotransposon protein, putative, unclassified
LOC_Os07g300501/11retrotransposon protein, putative, unclassified
LOC_Os08g219401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16460Os.1709.1.S1_x_at11/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16460Os.31497.2.S1_x_at1/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16470NANA10+7880149..7882884hypothetical protein
LOC_Os10g16480NANA10+7885474..7892223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16490NANA10+7894310..7895785hypothetical protein
LOC_Os10g16500OsAffx.31802.1.S1_at11/1110+7897436..7898233hypothetical protein
LOC_Os10g16510NANA10+7900759..7901441hypothetical protein
LOC_Os10g16520OsAffx.21779.2.S1_at11/1110+7904245..7906017retrotransposon protein, putative, unclassified
LOC_Os10g16520OsAffx.21779.3.S1_at1/1110+7904245..7906017retrotransposon protein, putative, unclassified
LOC_Os10g16530NANA10+7908637..7909667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16540NANA10+7911039..7914125retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16550NANA10+7916308..7921369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16560NANA10+7922720..7930781retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21779.2.S1_at--1033--6732Chr10:7905421..7905445 (25 bp)
GTTCATAAATCACTACTTGTTCCAG
LOC_Os10g16520
OsAffx.21779.2.S1_at--741--6833Chr10:7905445..7905469 (25 bp)
GTTTCAGCTGTCAATGTGCATAACC
LOC_Os10g16520
OsAffx.21779.2.S1_at--410--352Chr10:7905464..7905488 (25 bp)
ATAACCAGAAGCTTGCACCTCAGGA
LOC_Os10g16520
OsAffx.21779.2.S1_at--787--5853Chr10:7905487..7905511 (25 bp)
GACCAAGCAAGTCGGTTTTGTCTCA
LOC_Os10g16520
OsAffx.21779.2.S1_at--570--10813Chr10:7905504..7905528 (25 bp)
TTGTCTCAATTGTCGTAAGCCAGGA
LOC_Os10g16520
OsAffx.21779.2.S1_at--496--2313Chr10:7905564..7905600 (25 bp)
AAAGGCAGTTCATCTTACCAGCACT
LOC_Os10g16520
OsAffx.21779.2.S1_at--496--2611Chr10:7905824..7905848 (25 bp)
AACCCACTGCTGTCAATTCTAGCAA
LOC_Os10g16520
OsAffx.21779.2.S1_at--857--3032Chr10:7905867..7905891 (25 bp)
AATCCGGAGGCCCATCTGTAAATCA
LOC_Os10g16520
OsAffx.21779.2.S1_at--545--1791Chr10:7905891..7905915 (25 bp)
ACCGCTCGGTAATCCCATGAGCAAG
LOC_Os10g16520
OsAffx.21779.2.S1_at--850--5951Chr10:7905909..7905933 (25 bp)
GAGCAAGAAGATCCCATCTGCCATA
LOC_Os10g16520
OsAffx.21779.2.S1_at--450--471Chr10:7905924..7905948 (25 bp)
ATCTGCCATAGCTGTCAAGAGGATT
LOC_Os10g16520
Target Sequence 
GTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCG
GTTTTGTCTCAATTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCATCTTA
CCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGA
GGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAG
CTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTG
CTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGC
AAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21779.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis