Browse Element(s) Details


OsAffx.31802.1.S1_at

Description tigr:9638.m01342
TID=OsAffx.31802.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1650011/11hypothetical protein
LOC_Os06g256604/11transposon protein, putative, unclassified, expressed
LOC_Os06g281504/11transposon protein, putative, unclassified, expressed
LOC_Os12g189102/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16450NANA10+7873934..7875319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16460Os.1709.1.S1_x_at11/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16460Os.31497.2.S1_x_at1/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16470NANA10+7880149..7882884hypothetical protein
LOC_Os10g16480NANA10+7885474..7892223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16490NANA10+7894310..7895785hypothetical protein
LOC_Os10g16500OsAffx.31802.1.S1_at11/1110+7897436..7898233hypothetical protein
LOC_Os10g16510NANA10+7900759..7901441hypothetical protein
LOC_Os10g16520OsAffx.21779.2.S1_at11/1110+7904245..7906017retrotransposon protein, putative, unclassified
LOC_Os10g16520OsAffx.21779.3.S1_at1/1110+7904245..7906017retrotransposon protein, putative, unclassified
LOC_Os10g16530NANA10+7908637..7909667retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16540NANA10+7911039..7914125retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16550NANA10+7916308..7921369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16560NANA10+7922720..7930781retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31802.1.S1_at--4--8734Chr12:10975503..10975527 (25 bp)
TGTCAATTTTGACCGGCGTGATCGT
LOC_Os12g18910
OsAffx.31802.1.S1_at--97--1633Chr12:10975670..10975694 (25 bp)
AGCTGGAAGAGATTCCGGCAGATGT
LOC_Os12g18910
OsAffx.31802.1.S1_at--656--6311Chr10:7897973..7897997 (25 bp)
GATGAAATTAGTAGGCGTCCACCGC
LOC_Os10g16500
OsAffx.31802.1.S1_at--191--7272Chr10:7897989..7898013 (25 bp)
GTCCACCGCCAAAGTCAATGACAAA
LOC_Os10g16500
OsAffx.31802.1.S1_at--992--2671Chr10:7898023..7898047 (25 bp)
AAGCGACCCTAATGAGACGGTCCGT
LOC_Os10g16500
OsAffx.31802.1.S1_at--1118--1373Chr10:7898037..7898061 (25 bp)
AGACGGTCCGTCTAGGTGCTCCCGG
LOC_Os10g16500
OsAffx.31802.1.S1_at--514--7772Chr10:7898051..7898075 (25 bp)
GGTGCTCCCGGACCTAAAAAATGCA
LOC_Os10g16500
OsAffx.31802.1.S1_at--942--7791Chr10:7898096..7898120 (25 bp)
GGTCTAAAGGATGGCCACAATGTGA
LOC_Os10g16500
OsAffx.31802.1.S1_at--881--8432Chr10:7898108..7898132 (25 bp)
GGCCACAATGTGAGTACATGCCCTA
LOC_Os10g16500
OsAffx.31802.1.S1_at--1064--9871Chr10:7898122..7898146 (25 bp)
TACATGCCCTAAAAACCCGTCGAAT
LOC_Os10g16500
OsAffx.31802.1.S1_at--947--3111Chr10:7898144..7898168 (25 bp)
AATTTCGAACGTTTAGCTGCAGCTA
LOC_Os10g16500
Target Sequence 
TGTCAATTTTGACCGGCGTGATCGTCCAATAGCGGGGCNAGANGGTGTTAAATTATCANACAGGACAAAGGTGTTGTCAT
TGGATGCACAGCANCTAGTAAAGTGGGGGAGGAGGTCGTCANTTGCTTTCGAAAGGGCNACNTCAGTGATGAAAGGGCTG
AGAAATCAGCTGGAAGAGATTCCGGCAGATGTNCANGGGTTAGATNCAGATGATGGTGTGAGTGAGCATGAGGTTGANGT
TGGCGATGGAGCTNGGCCATCAATNNANCGGGGTGTAAGTGCTGGTGATGAAATTAGTAGGCGTCCACCGCCAAAGTCAA
TGACAAAAGGGAGGGGAAGCGACCCTAATGAGACGGTCCGTCTAGGTGCTCCCGGACCTAAAAAATGCACCAGGGGCTGC
AGTTGGTGTGGTCTAAAGGATGGCCACAATGTGAGTACATGCCCTAAAAACCCGTCGAATTTCGAACGTTTAGCTGCAGC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis