Browse Element(s) Details


OsAffx.6678.1.S1_at

Description tigr:9638.m01415
TID=OsAffx.6678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1722011/11hypothetical protein
LOC_Os11g276701/11hypothetical protein
LOC_Os12g149841/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17180NANA10+8298083..8299770retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17190NANA10+8302009..8302798hypothetical protein
LOC_Os10g17210Os.24831.4.S1_x_at11/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.3.S1_s_at11/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.1.S1_x_at6/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.3.S1_x_at5/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17220OsAffx.6678.1.S1_at11/1110+8323252..8323716hypothetical protein
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6678.1.S1_at--325--9911Chr10:8323662..8323686 (25 bp)
TACTCCCATGTGAAGGGCTATATCG
LOC_Os10g17220
OsAffx.6678.1.S1_at--808--5312Chr11:16740825..16740844 (20 bp)
GAAGGGCTATATCGGTATCTTCCGT
NONE
OsAffx.6678.1.S1_at--922--7931Chr10:8323618..8323642 (25 bp)
GGATTTTATCTGTGACGTCAAGAAA
LOC_Os10g17220
OsAffx.6678.1.S1_at--446--5971Chr10:8323563..8323587 (25 bp)
GAGAACGGTTACTGTTTATCTCCGA
LOC_Os10g17220
OsAffx.6678.1.S1_at--778--10277Chr11:9867631..9867651 (21 bp)
TTACTGTTTATCTCCGAACCTTGTT
NONE
OsAffx.6678.1.S1_at--796--5433Chr11:12821896..12821920 (25 bp)
GAACCTTGTTCATCCTTGTATCCTT
NONE
OsAffx.6678.1.S1_at--939--9071Chr10:8323486..8323510 (25 bp)
TGCTACCTTCATCCTCGTAAAACTT
LOC_Os10g17220
OsAffx.6678.1.S1_at--857--3651Chr10:8323480..8323504 (25 bp)
CTTCATCCTCGTAAAACTTTTCTCG
LOC_Os10g17220
OsAffx.6678.1.S1_at--99--9831Chr10:8323469..8323493 (25 bp)
TAAAACTTTTCTCGCCTATGGAGCC
LOC_Os10g17220
OsAffx.6678.1.S1_at--325--3091Chr10:8323372..8323396 (25 bp)
AATACCTGGCTATGAAATATGTCCC
LOC_Os10g17220
OsAffx.6678.1.S1_at--298--8491Chr10:8323366..8323390 (25 bp)
TGGCTATGAAATATGTCCCAAATTC
LOC_Os10g17220
Target Sequence 
TACTCCCATGTGAAGGGCTATATCGGTATCTTCCGTGCGCTTGCGGATTTTATCTGTGACGTCAAGAAATACCAACAAGC
ATTTCTAGCGCCGTTGCCGGAGAACGGTTACTGTTTATCTCCGAACCTTGTTCATCCTTGTATCCTTTTTACTTTTCTTT
CTTATACCTTCACCCCTGCTACCTTCATCCTCGTAAAACTTTTCTCGCCTATGGAGCCACTATCTATCTTCCAATTATTT
GCTCCTCGGGGCGAATTTTATGAGCCACCTCCTTCATCGGAGCCTATTTTAATACCTGGCTATGAAATATGTCCCAAATT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis