Browse Element(s) Details


OsAffx.24300.1.S1_at

Description tigr:9630.m01703
TID=OsAffx.24300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1808011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18050NANA2+10479058..10480447hypothetical protein
LOC_Os02g18060OsAffx.20650.1.S1_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.2.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.27088.1.A1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.3.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18064Os.51841.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.54691.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.31929.2.S1_x_at2/112+10483366..10488682expressed protein
LOC_Os02g18064OsAffx.10222.1.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.23706.1.A1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.46012.3.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18070OsAffx.2660.1.S1_at11/112+10490444..10496411NB-ARC domain containing protein, expressed
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24300.1.S1_at--335--7551Chr02:10507796..10507820 (25 bp)
GTGGCCTGAGCATCAACCTGCTGTA
LOC_Os02g18080
OsAffx.24300.1.S1_at--571--4471Chr02:10507799..10507823 (25 bp)
GCCTGAGCATCAACCTGCTGTAGAG
LOC_Os02g18080
OsAffx.24300.1.S1_at--1111--4951Chr02:10507805..10507829 (25 bp)
GCATCAACCTGCTGTAGAGAAAATT
LOC_Os02g18080
OsAffx.24300.1.S1_at--1065--5951Chr02:10507821..10507845 (25 bp)
GAGAAAATTTATGTTGCCCTATGTA
LOC_Os02g18080
OsAffx.24300.1.S1_at--57--10131Chr02:10507830..10507854 (25 bp)
TATGTTGCCCTATGTAGCAGTCTGC
LOC_Os02g18080
OsAffx.24300.1.S1_at--1137--10691Chr02:10507834..10507858 (25 bp)
TTGCCCTATGTAGCAGTCTGCGTAC
LOC_Os02g18080
OsAffx.24300.1.S1_at--69--10131Chr02:10507840..10507864 (25 bp)
TATGTAGCAGTCTGCGTACCCTGCC
LOC_Os02g18080
OsAffx.24300.1.S1_at--267--6991Chr02:10507855..10507879 (25 bp)
GTACCCTGCCGTGTGAACTGTTGAA
LOC_Os02g18080
OsAffx.24300.1.S1_at--816--3811Chr02:10507860..10507884 (25 bp)
CTGCCGTGTGAACTGTTGAAGGACT
LOC_Os02g18080
OsAffx.24300.1.S1_at--34--2571Chr02:10507870..10507894 (25 bp)
AACTGTTGAAGGACTTTTCTGTTCT
LOC_Os02g18080
OsAffx.24300.1.S1_at--256--3191Chr02:10508279..10508303 (25 bp)
CAATCTTTGTGTGATGATGCCAAAA
LOC_Os02g18080
Target Sequence 
GTGGCCTGAGCATCAACCTGCTGTAGAGAAAATTTATGTTGCCCTATGTAGCAGTCTGCGTACCCTGCCGTGTGAACTGT
TGAAGGACTTTTCTGTTCTGAAGGATCTGAAGATTTGTTTCTGTCCAAGTCTCAAGTGGCACAGGCGCCTGGTTTTGCCA
TCTACTCTCCAAAGGCTCTCCTTAACTAGATGTGGGGATATCTCTCCCTGTGTACCCAGCTGCCTGGAGAACCTTGCCTC
CCTCGTGTCACTGGAGATCACCTTTTGCTCAATTGTGGCATACATTCCAGCTTCACTGTGGCGCGGTAATCTCTCATCGC
TCCGGGATTTACATATTCGGGGTTGCGAAGATCTTGTATCAATTGGTGGAGCAGGCGCGATTGCGGAAATAAACAAGGTG
AAGATAGAAGGCTGTCTAAAGCTGAAGGAAATAGAGCAGCCAATGAGCAGAGCCAGACTGTAGATCTCATGAGAGAGCCG
ATTCAATCTTTGTGTGATGATGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis