Browse Element(s) Details


OsAffx.2661.1.S1_at

Description tigr:9630.m01705
TID=OsAffx.2661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18070OsAffx.2660.1.S1_at11/112+10490444..10496411NB-ARC domain containing protein, expressed
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2661.1.S1_at--646--9211Chr02:10514558..10514582 (25 bp)
TCCACTTCAAGTAGGGAGGCACAAG
LOC_Os02g18100
OsAffx.2661.1.S1_at--1099--5271Chr02:10514582..10514606 (25 bp)
GAAGGTACCCAAGTTCCCTGACAAG
LOC_Os02g18100
OsAffx.2661.1.S1_at--1077--1151Chr02:10514593..10514617 (25 bp)
AGTTCCCTGACAAGACTACGGTCTT
LOC_Os02g18100
OsAffx.2661.1.S1_at--272--8651Chr02:10514626..10514650 (25 bp)
TGGGCACCCTGATCGGCAAACTGGA
LOC_Os02g18100
OsAffx.2661.1.S1_at--905--2131Chr02:10514655..10514679 (25 bp)
ACAGTATCCAAGCACGCCGCTCAGG
LOC_Os02g18100
OsAffx.2661.1.S1_at--409--6031Chr02:10514688..10514712 (25 bp)
GAGATGCACACCGATCGATGGACGA
LOC_Os02g18100
OsAffx.2661.1.S1_at--91--9391Chr02:10514702..10514726 (25 bp)
TCGATGGACGAGCACTTGCGATGTC
LOC_Os02g18100
OsAffx.2661.1.S1_at--200--2071Chr02:10514715..10514739 (25 bp)
ACTTGCGATGTCCTTGTGTGTATCA
LOC_Os02g18100
OsAffx.2661.1.S1_at--935--8751Chr02:10514733..10514757 (25 bp)
TGTATCAAGCTCACACACCCCGAGA
LOC_Os02g18100
OsAffx.2661.1.S1_at--465--3091Chr02:10514815..10514839 (25 bp)
AATACTTTCCCGAGTCAGAGCTATC
LOC_Os02g18100
OsAffx.2661.1.S1_at--19--1371Chr02:10514831..10514855 (25 bp)
AGAGCTATCTGTAGGCGGCGAGTCA
LOC_Os02g18100
Target Sequence 
TCCACTTCAAGTAGGGAGGCACAAGAAGGTACCCAAGTTCCCTGACAAGACTACGGTCTTGGGGTCCCTGGGCACCCTGA
TCGGCAAACTGGAGGCTACAGTATCCAAGCACGCCGCTCAGGCCGCCAAGGAGATGCACACCGATCGATGGACGAGCACT
TGCGATGTCCTTGTGTGTATCAAGCTCACACACCCCGAGATCAACCTGGAAGAGGTGCTATCCAAGAGCGGGGCGGAGAA
GACACACGAGGGCATAAAATACTTTCCCGAGTCAGAGCTATCTGTAGGCGGCGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis