Browse Element(s) Details


OsAffx.24301.1.S1_at

Description tigr:9630.m01708
TID=OsAffx.24301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24301.1.S1_at--377--4311Chr02:10533063..10533087 (25 bp)
CCTTCATACCATCTCGGAGACGGAA
LOC_Os02g18130
OsAffx.24301.1.S1_at--388--5731Chr02:10533045..10533069 (25 bp)
GACGGAACCCGCAGCATTTGGAGAT
LOC_Os02g18130
OsAffx.24301.1.S1_at--66--8051Chr02:10533026..10533050 (25 bp)
GGAGATCCTGTTGGACTCCATCATA
LOC_Os02g18130
OsAffx.24301.1.S1_at--960--6611Chr02:10533017..10533041 (25 bp)
GTTGGACTCCATCATATCCATCGGA
LOC_Os02g18130
OsAffx.24301.1.S1_at--192--10091Chr02:10533003..10533027 (25 bp)
TATCCATCGGAGCTTGTAAAAATAG
LOC_Os02g18130
OsAffx.24301.1.S1_at--422--2911Chr02:10532967..10532991 (25 bp)
AAGGAACGGCACTACACCGACGTAG
LOC_Os02g18130
OsAffx.24301.1.S1_at--1113--2011Chr02:10532957..10532981 (25 bp)
ACTACACCGACGTAGGCCTCACAAA
LOC_Os02g18130
OsAffx.24301.1.S1_at--82--7731Chr02:10532884..10532908 (25 bp)
GGTGGAGGCCGTAGAAATTTACAAT
LOC_Os02g18130
OsAffx.24301.1.S1_at--28--4911Chr02:10532709..10532733 (25 bp)
GCTTCATCCCGGAGGTGTCGATGGA
LOC_Os02g18130
OsAffx.24301.1.S1_at--590--6211Chr02:10532683..10532707 (25 bp)
GAGGCTCCAAGATCCATTGATACGA
LOC_Os02g18130
OsAffx.24301.1.S1_at--925--10731Chr02:10532667..10532691 (25 bp)
TTGATACGACGGAGATGGCCAGAGA
LOC_Os02g18130
Target Sequence 
CCTTCATACCATCTCGGAGACGGAACCCGCAGCATTTGGAGATCCTGTTGGACTCCATCATATCCATCGGAGCTTGTAAA
AATAGCGGAAGAGATCAAGGAACGGCACTACACCGACGTAGGCCTCACAAAGATGAGCAAATATGCTCAAAAAAGCAATA
GAGTTAGGGTTCAAGTGAAGGTGGAGGCCGTAGAAATTTACAATCAAGAGGAGAAATTTAGAAGGAGGAGCTTCATCCCG
GAGGTGTCGATGGATGAGGCTCCAAGATCCATTGATACGACGGAGATGGCCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis