Browse Element(s) Details


OsAffx.31859.1.S1_at

Description tigr:9640.m02293
TID=OsAffx.31859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2409011/11hypothetical protein
LOC_Os02g181601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24080Os.7856.1.S1_at11/1112+13694409..13699916E3 ubiquitin protein ligase UPL1, putative, expressed
LOC_Os12g24084Os.57319.1.S1_at11/1112+13700648..13701177expressed protein
LOC_Os12g24090OsAffx.31859.1.S1_at11/1112+13702410..13703495hypothetical protein
LOC_Os12g24100NANA12+13704466..13708312retrotransposon protein, putative, unclassified
LOC_Os12g24110NANA12+13710442..13717175retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31859.1.S1_at--918--7293Chr12:13703437..13703461 (25 bp)
GTGCCCACGAGGTAATTTATGTCCA
LOC_Os12g24090
OsAffx.31859.1.S1_at--395--9731Chr12:13703425..13703449 (25 bp)
TAATTTATGTCCACGGGTATACCCG
LOC_Os12g24090
OsAffx.31859.1.S1_at--1092--2091Chr12:13703395..13703419 (25 bp)
ACATGACGAGCAAGGAGTACTTCCC
LOC_Os12g24090
OsAffx.31859.1.S1_at--414--9951Chr12:13703342..13703366 (25 bp)
TACCCATCCAAAGATCAGTTCAAGG
LOC_Os12g24090
OsAffx.31859.1.S1_at--1150--2958Chr08:4675406..4675429 (24 bp)
AATGGGCAAAACTGCCATCCCTAGG
NONE
OsAffx.31859.1.S1_at--1036--531Chr12:13702614..13702638 (25 bp)
ATCCCTAGGCAAGAAGCACCAAAGT
LOC_Os12g24090
OsAffx.31859.1.S1_at--617--1011Chr12:13702583..13702607 (25 bp)
AGGTCAGTAGTCATTTTTGGCCGAA
LOC_Os12g24090
OsAffx.31859.1.S1_at--80--10831Chr12:13702567..13702591 (25 bp)
TTGGCCGAAGGGTTGCGACAAGCAC
LOC_Os12g24090
OsAffx.31859.1.S1_at--773--3371Chr12:13702545..13702569 (25 bp)
CACCAAGGTAGAGGCCTTCTGCGGT
LOC_Os12g24090
OsAffx.31859.1.S1_at--587--10591Chr12:13702529..13702553 (25 bp)
TTCTGCGGTGCTGACTGCATTCGCC
LOC_Os12g24090
OsAffx.31859.1.S1_at--553--3371Chr12:13702449..13702473 (25 bp)
CACCATCTGCGCATCTGGAAAGGCA
LOC_Os12g24090
Target Sequence 
GTGCCCACGAGGTAATTTATGTCCACGGGTATACCCGTTACTACATGACGAGCAAGGAGTACTTCCCATGCCCGTCACCC
GCGGGCATGCCCGTTTACCCATCCAAAGATCAGTTCAAGGGTAAATGGGCAAAACTGCCATCCCTAGGCAAGAAGCACCA
AAGTAGAAGCAGGTCAGTAGTCATTTTTGGCCGAAGGGTTGCGACAAGCACCAAGGTAGAGGCCTTCTGCGGTGCTGACT
GCATTCGCCTTCGCGCTGTAGCCCACAGCCACGGCTCTGCTGCTCCTTCCCCTGCAGCATGGACCACCATCTGCGCATCT
GGAAAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis