Browse Element(s) Details


Os.7856.1.S1_at

Description gb:AK071849.1
DB_XREF= gi:32981872
TID=Os.7856.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120O04, full insert sequence.
FL= gb:AK073264.1 gb:AK071849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2408011/11E3 ubiquitin protein ligase UPL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein
LOC_Os12g24080Os.7856.1.S1_at11/1112+13694409..13699916E3 ubiquitin protein ligase UPL1, putative, expressed
LOC_Os12g24084Os.57319.1.S1_at11/1112+13700648..13701177expressed protein
LOC_Os12g24090OsAffx.31859.1.S1_at11/1112+13702410..13703495hypothetical protein
LOC_Os12g24100NANA12+13704466..13708312retrotransposon protein, putative, unclassified
LOC_Os12g24110NANA12+13710442..13717175retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7856.1.S1_at--681--6591Chr12:13699318..13699342 (25 bp)
GATTGCTACTGGCTATTCATGAGGC
LOC_Os12g24080
Os.7856.1.S1_at--902--10231Chr12:13699359..13699383 (25 bp)
TTTGGTTAATCAGTCACTCCTGCAC
LOC_Os12g24080
Os.7856.1.S1_at--27--8131Chr12:13699456..13699480 (25 bp)
GGACTCTTACATAACCTGCTACTAG
LOC_Os12g24080
Os.7856.1.S1_at--497--10051Chr12:13699478..13699502 (25 bp)
TAGATTCATTTGTTGCCTGCATCAA
LOC_Os12g24080
Os.7856.1.S1_at--1125--451Chr12:13699505..13699529 (25 bp)
ATCGGCGTTGGTCCCTGAAGACTGA
LOC_Os12g24080
Os.7856.1.S1_at--235--10271Chr12:13699535..13699559 (25 bp)
TTTGTTGACAAAGTACCGGCCTGCC
LOC_Os12g24080
Os.7856.1.S1_at--1012--3811Chr12:13699555..13699579 (25 bp)
CTGCCCACGATGCTTTATAGGACTG
LOC_Os12g24080
Os.7856.1.S1_at--966--4431Chr12:13699684..13699708 (25 bp)
GCCATTGCCCCGTTAATAGATTTCA
LOC_Os12g24080
Os.7856.1.S1_at--838--9671Chr12:13699706..13699730 (25 bp)
TCACCTTCTCTATACATTGGACCTG
LOC_Os12g24080
Os.7856.1.S1_at--998--2431Chr12:13699850..13699874 (25 bp)
AAAAGTGTCTGGAGCCACGGGCTGC
LOC_Os12g24080
Os.7856.1.S1_at--183--3971Chr12:13699867..13699891 (25 bp)
CGGGCTGCGGCTATAAATTTTACTC
LOC_Os12g24080
Target Sequence 
GATTGCTACTGGCTATTCATGAGGCGAATGAAGGTTTCGGATTTGGTTAATCAGTCACTCCTGCACCTGTGTGCAAGAAA
TTTCAGGGAGTAATGTACAGATACCGTCGGAGTTGCAATAGGCGAGGGGAATGTGCNCGGACTCTTACATAACCTGCTAC
TAGATTCATTTGTTGCCTGCATCAACCATCGGCGTTGGTCCCTGAAGACTGATGAGATTTGTTGACAAAGTACCGGCCTG
CCCACGATGCTTTATAGGACTGGTTGCTGCGAAGGATGTGCAGGGAGGTGTAGCAGGAAGTGCTAGAAGACAGCAACTAT
TTGGTGTTCATAATATTTTTTTTCTTTCCCTTTTGGGTCTTTTTTGGCCATTGCCCCGTTAATAGATTTCACCTTCTCTA
TACATTGGACCTGTATGGAATTTTTTTCCTTTTTTATTCAAGTTTGTTTTTGGGGGGCATAGACCGGTGGAATGCAACAT
TAAGTAGAATGCAAGTTTTCCATCGCTATTGCATATTCAATGCACATTGACTAAAAGTGTCTGGAGCCACGGGCTGCGGC
TATAAATTTTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis