Browse Element(s) Details


Os.23555.1.A1_at

Description gb:CA759998
DB_XREF= gi:25804037
DB_XREF=BR060009A20H11.ab1
CLONE=BR060009A20H11.ab1
TID=Os.23555.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23555 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g240607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein
LOC_Os12g24080Os.7856.1.S1_at11/1112+13694409..13699916E3 ubiquitin protein ligase UPL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23555.1.A1_at--298--6411Chr12:13672678..13672786 (25 bp)
GATCTCCATTCCAAGGTGACACGTT
LOC_Os12g24060
Os.23555.1.A1_at--1071--3371Chr12:13672804..13672828 (25 bp)
CAGCTCCTCGGATTCTATGTTTGGA
LOC_Os12g24060
Os.23555.1.A1_at--191--9011Chr12:13672857..13672881 (25 bp)
TGAATAGTGGGCATCCATACTCCCT
LOC_Os12g24060
Os.23555.1.A1_at--880--9311Chr12:13672877..13672901 (25 bp)
TCCCTCTAGCTCAAGATGGCCAATG
LOC_Os12g24060
Os.23555.1.A1_at--617--9071Chr12:13672900..13672924 (25 bp)
TGCTGCCAGTTATCATCACCTTTAA
LOC_Os12g24060
Os.23555.1.A1_at--57--4651NONE
GCGTATTTCATCTGGCTTGTAAATA
NONE
Os.23555.1.A1_at--905--7891Chr12:13673000..13673024 (25 bp)
GGTTCTTAGTTTATCAGTGTCGCAC
LOC_Os12g24060
Os.23555.1.A1_at--182--3471Chr12:13673014..13673038 (25 bp)
CAGTGTCGCACGTTCCATAGAGAAA
LOC_Os12g24060
Os.23555.1.A1_at--385--1911NONE
ACGGGATACCGGTTACTGTCAATTG
NONE
Os.23555.1.A1_at--814--10751NONE
TTGAAATGTGTATCCCACTCGCAGT
NONE
Os.23555.1.A1_at--460--4371NONE
CCACTCGCAGTACCAATTGATCTTG
NONE
Target Sequence 
GATCTCCATTCCAAGGTGACACGTTTTCCTTGGACGTGTTGACAGCTCCTCGGATTCTATGTTTGGATGGAACACGGATG
TTCTTAGGAGAGTGTTGAATAGTGGGCATCCATACTCCCTCTAGCTCAAGATGGCCAATGCTGCCAGTTATCATCACCTT
TAATGCTCATAAGGAACAAAGTTTGTGTACATAATCATGTGCGTATTTCATCTGGCTTGTAAATATTTAGGCTAATTTGG
TTCTTAGTTTATCAGTGTCGCACGTTCCATAGAGAAACAGGTTCTGAGTATTTTGCAGTAACATCAGATGGTTCATTGTG
ACGGGATACCGGTTACTGTCAATTGAAATGTGTATCCCACTCGCAGTACCAATTGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23555.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis