Browse Element(s) Details


Os.27625.1.S1_at

Description gb:AK063419.1
DB_XREF= gi:32973437
TID=Os.27625.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C02, full insert sequence.
FL= gb:AK100244.1 gb:AK063419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2402011/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27625.1.S1_at--559--10351Chr12:13655671..13655695 (25 bp)
TTTATTACCTCATTGTCCGCTATCA
LOC_Os12g24020
Os.27625.1.S1_at--1062--111Chr12:13655707..13655731 (25 bp)
ATTAATGCTGGTGGCTCCGTACAAG
LOC_Os12g24020
Os.27625.1.S1_at--4--10651Chr12:13655744..13655768 (25 bp)
TTCCACAAGGTTCACTATTTCCGCT
LOC_Os12g24020
Os.27625.1.S1_at--388--10291Chr12:13655761..13655785 (25 bp)
TTTCCGCTGCGAACCATTTTGTGGA
LOC_Os12g24020
Os.27625.1.S1_at--761--5371Chr12:13655784..13655808 (25 bp)
GAAGAAGTGACAAGCCCGTACGGGA
LOC_Os12g24020
Os.27625.1.S1_at--576--8451Chr12:13655846..13655870 (25 bp)
TGGCCATTTGGAGCTCAGGGACCAC
LOC_Os12g24020
Os.27625.1.S1_at--877--10151Chr12:13655874..13655898 (25 bp)
TATCTAACCGCACGGAGCTCATGGG
LOC_Os12g24020
Os.27625.1.S1_at--1048--1571Chr12:13655889..13655913 (25 bp)
AGCTCATGGGCCGTCAGGTCTAGCG
LOC_Os12g24020
Os.27625.1.S1_at--211--1051Chr12:13655932..13655956 (25 bp)
AGGTGCAAGTGCGATGGCTACTCCA
LOC_Os12g24020
Os.27625.1.S1_at--1012--5451Chr12:13656002..13656026 (25 bp)
GAACGTCTCTGCATAATTCTCTTTG
LOC_Os12g24020
Os.27625.1.S1_at--161--111Chr12:13656017..13656041 (25 bp)
ATTCTCTTTGCCCTTTTACATCAAG
LOC_Os12g24020
Target Sequence 
TTTATTACCTCATTGTCCGCTATCACGGAACCTTATATTAATGCTGGTGGCTCCGTACAAGGCTCGCTACTCCTTCCACA
AGGTTCACTATTTCCGCTGCGAACCATTTTGTGGAAGAAGTGACAAGCCCGTACGGGAGTAGCGGTGGCGACTCCCATCT
TCTCTCCCGGCGTGGTGGCCATTTGGAGCTCAGGGACCACCCCTATCTAACCGCACGGAGCTCATGGGCCGTCAGGTCTA
GCGGCCATGCTGGATCCGGCCAGGTGCAAGTGCGATGGCTACTCCACCATGCCAATGACAAGTAGGAATTGCAACGTGTN
AGGAGTTGGTAGAACGTCTCTGCATAATTCTCTTTGCCCTTTTACATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis