Browse Element(s) Details


OsAffx.7682.1.S1_s_at

Description tigr:9640.m02289
TID=OsAffx.7682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2406011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein
LOC_Os12g24080Os.7856.1.S1_at11/1112+13694409..13699916E3 ubiquitin protein ligase UPL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7682.1.S1_s_at--12--1351Chr12:13672554..13672578 (25 bp)
AGAGTAGCTCAAGACGTGCTGCCTT
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--555--10011Chr12:13672558..13672582 (25 bp)
TAGCTCAAGACGTGCTGCCTTGGAA
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--193--1391Chr12:13672565..13672589 (25 bp)
AGACGTGCTGCCTTGGAATCATCAA
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--442--7311Chr12:13672569..13672593 (25 bp)
GTGCTGCCTTGGAATCATCAATTCA
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--185--4791Chr12:13672571..13672595 (25 bp)
GCTGCCTTGGAATCATCAATTCATG
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--29--371Chr12:13672585..13672609 (25 bp)
ATCAATTCATGAAGTACTATTCCAG
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--747--7011Chr12:13672598..13672622 (25 bp)
GTACTATTCCAGATCATAAACTTTG
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--309--3691Chr12:13672601..13672625 (25 bp)
CTATTCCAGATCATAAACTTTGCCA
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--1094--3571Chr12:13672640..13672664 (25 bp)
CATATTCCTCCAATCCCTGATAGAA
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--559--10671Chr12:13672644..13672668 (25 bp)
TTCCTCCAATCCCTGATAGAATATT
LOC_Os12g24060
OsAffx.7682.1.S1_s_at--1019--9191Chr12:13672648..13672672 (25 bp)
TCCAATCCCTGATAGAATATTCAAT
LOC_Os12g24060
Target Sequence 
AGAGTAGCTCAAGACGTGCTGCCTTGGAATCATCAATTCATGAAGTACTATTCCAGATCATAAACTTTGCCAATGAGAAA
AAGGACCATATTCCTCCAATCCCTGATAGAATATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7682.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis