Browse Element(s) Details


Os.55727.1.A1_at

Description gb:AK108669.1
DB_XREF= gi:32993878
TID=Os.55727.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H01, full insert sequence.
FL= gb:AK108669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g240501/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55727.1.A1_at--1038--9451Chr10:13989005..13989029 (25 bp)
TCTGGTCTCCGGCAAGCGCAAATCT
NONE
Os.55727.1.A1_at--197--1591Chr10:13988991..13989015 (25 bp)
AGCGCAAATCTCGATGCACCAGCAG
NONE
Os.55727.1.A1_at--152--5091Chr10:13988976..13989000 (25 bp)
GCACCAGCAGTAGCATTTGGCTTGC
NONE
Os.55727.1.A1_at--460--5071Chr10:13988947..13988971 (25 bp)
GCAGCTCTCCTTGTCAGACTTGGGA
NONE
Os.55727.1.A1_at--931--5671Chr10:13988931..13988955 (25 bp)
GACTTGGGACTCCTGATGGATATCA
NONE
Os.55727.1.A1_at--41--251Chr10:13988912..13988936 (25 bp)
ATATCATGGTCTCCATCTGAACCGG
NONE
Os.55727.1.A1_at--398--731Chr10:13988712..13988736 (25 bp)
ATGTTGTCCTCCATTGCTGGCAGGT
NONE
Os.55727.1.A1_at--540--3212Chr12:13665933..13665957 (23 bp)
CAAGGTGATGTTGCAAGCCTGTCTT
LOC_Os12g24050
Os.55727.1.A1_at--651--8731Chr10:13988616..13988640 (25 bp)
TGTCTTGTTTGCACGTTTTCCTCTT
NONE
Os.55727.1.A1_at--668--10392Chr10:13988601..13988625 (25 bp)
TTTTCCTCTTGTCTGGTTGATCCAC
NONE
Os.55727.1.A1_at--1053--3311Chr10:13988579..13988603 (25 bp)
CACTTCCTCTTGTTGTTAATCCAAA
NONE
Target Sequence 
TCTGGTCTCCGGCAAGCGCAAATCTCGATGCACCAGCAGTAGCATTTGGCTTGCTGCTGCAGCTCTCCTTGTCAGACTTG
GGACTCCTGATGGATATCATGGTCTCCATCTGAACCGGGTNAGCCTCTCTTCNCTTGAAGCTCAGGGAGNCCCNCTATGA
TCAGCTTCCCCCCGNANCCGAATGCCGGCAGCAATGTCGCCGACGGTGATGGCATCGGTGATGTCGACGGCGAGTCATCG
GCGGCGGCCTCCATGTCGTCGTCGAAGCTGAGGGACCGGATGAACAGCCTGCCCATGTTGTCCTCCATTGCTGGCAGGTA
GTCGTCTGGTGGGTATGAGATTGACAGCCCCATCTTTCTTGGCTTTGGACTCAAGGTGATGTTGCAAGCCTGTCTTGTTT
GCACGTTTTCCTCTTGTCTGGTTGATCCACTTCCTCTTGTTGTTAATCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55727.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis