Browse Element(s) Details


OsAffx.31858.1.S1_at

Description tigr:9640.m02287
TID=OsAffx.31858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 9, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2404011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31858.1.S1_at--842--9211Chr12:13660906..13660930 (25 bp)
TCCAGCGGCAGCACCGTACTGCAGG
LOC_Os12g24040
OsAffx.31858.1.S1_at--732--5051Chr12:13660913..13660937 (25 bp)
GCAGCACCGTACTGCAGGCGGCGGT
LOC_Os12g24040
OsAffx.31858.1.S1_at--348--7491Chr12:13660957..13660981 (25 bp)
GTGGTGGTAGGCGACGCCCCACACA
LOC_Os12g24040
OsAffx.31858.1.S1_at--831--8611Chr12:13660958..13660982 (25 bp)
TGGTGGTAGGCGACGCCCCACACAG
LOC_Os12g24040
OsAffx.31858.1.S1_at--1128--3612Chr12:13661088..13661112 (25 bp)
CTTGTCCCAGTTGGCCAGCGTGCCG
LOC_Os12g24040
OsAffx.31858.1.S1_at--1111--5331Chr12:13661900..13661921 (22 bp)
GAAGTTATTGATTAGACGCTTCGGG
LOC_Os12g24040
OsAffx.31858.1.S1_at--799--7231Chr12:13661922..13661946 (25 bp)
GTCGCGGAGATGAACTGCGAGACCT
LOC_Os12g24040
OsAffx.31858.1.S1_at--37--4691Chr12:13661925..13661949 (25 bp)
GCGGAGATGAACTGCGAGACCTGTC
LOC_Os12g24040
OsAffx.31858.1.S1_at--1111--3951Chr12:13661926..13661950 (25 bp)
CGGAGATGAACTGCGAGACCTGTCA
LOC_Os12g24040
OsAffx.31858.1.S1_at--544--6031Chr12:13661928..13661952 (25 bp)
GAGATGAACTGCGAGACCTGTCAGC
LOC_Os12g24040
OsAffx.31858.1.S1_at--1019--1291Chr12:13661929..13661953 (25 bp)
AGATGAACTGCGAGACCTGTCAGCT
LOC_Os12g24040
Target Sequence 
TCCAGCGGCAGCACCGTACTGCAGGCGGCGGTGGCGGCAGTGGCGGTGGCGGTGGTGGTAGGCGACGCCCCACACAGCCA
CGGCGCCGTCATCAGCAGCCCGCCTCCTCCCGCGCACCGCCCCTTCTCCCCGCCGGTCGCCTTGTCCCCATCGGCTGCCG
GCACCGCCCCTTCTCCCTTCCCCTTGTCCCAGTTGGCCAGCGTGCCGCCCTTCTCCCCGCCAGTCGCCGTCCGTCGCGTC
ATCCTCCTCGCCGTCAGCTTGCAGAGAAGTTATTGATTAGACGCTTCGGGGTCGCGGAGATGAACTGCGAGACCTGTCAG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis