Browse Element(s) Details


OsAffx.31857.1.S1_at

Description tigr:9640.m02286
TID=OsAffx.31857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31857.1.S1_at--571--2211Chr12:13658229..13658253 (25 bp)
ACAACCAGTGCGCACGGTTCGCAGT
LOC_Os12g24030
OsAffx.31857.1.S1_at--927--6691Chr12:13658213..13658237 (25 bp)
GTTCGCAGTGGAGCAAGACCCGGAC
LOC_Os12g24030
OsAffx.31857.1.S1_at--76--5811Chr12:13658191..13658215 (25 bp)
GACCCCGAGTCGCTATCCAGTGAAA
LOC_Os12g24030
OsAffx.31857.1.S1_at--309--7231Chr12:13658183..13658207 (25 bp)
GTCGCTATCCAGTGAAAACCTCAAG
LOC_Os12g24030
OsAffx.31857.1.S1_at--1105--3212Chr12:25249607..25249626 (20 bp)
CAAGTGCGGCGACGACATCGGCATC
NONE
OsAffx.31857.1.S1_at--4--9891Chr12:13658134..13658158 (25 bp)
TACATCGTCGCCATTGTTCGGGTCA
LOC_Os12g24030
OsAffx.31857.1.S1_at--1075--3591Chr12:13658123..13658147 (25 bp)
CATTGTTCGGGTCATCTTCGTGCAT
LOC_Os12g24030
OsAffx.31857.1.S1_at--645--431Chr12:13658110..13658134 (25 bp)
ATCTTCGTGCATGACCGGGTGCTCG
LOC_Os12g24030
OsAffx.31857.1.S1_at--793--9091Chr12:13658091..13658115 (25 bp)
TGCTCGTCATTGTTGGAGATTTGGA
LOC_Os12g24030
OsAffx.31857.1.S1_at--180--7411Chr12:13658056..13658080 (25 bp)
GTGTTCCGGCTCGACAAGATGACGT
LOC_Os12g24030
OsAffx.31857.1.S1_at--72--2811Chr12:13658041..13658065 (25 bp)
AAGATGACGTTCACTACCGCGACAT
LOC_Os12g24030
Target Sequence 
ACAACCAGTGCGCACGGTTCGCAGTGGAGCAAGACCCGGACCCCGAGTCGCTATCCAGTGAAAACCTCAAGTGCGGCGAC
GACATCGGCATCGGCTACATCGTCGCCATTGTTCGGGTCATCTTCGTGCATGACCGGGTGCTCGTCATTGTTGGAGATTT
GGAGGGGGTGAAGGTGTTCCGGCTCGACAAGATGACGTTCACTACCGCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis