Browse Element(s) Details


Os.6286.1.S1_at

Description gb:AU166922
DB_XREF= gi:12405321
DB_XREF=AU166922
CLONE=C53104
TID=Os.6286.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6286 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g240402/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein
LOC_Os12g24020Os.27625.1.S1_at11/1112+13654439..13656115Rhodanese-like domain containing protein, expressed
LOC_Os12g24030OsAffx.31857.1.S1_at11/1112+13658000..13658284hypothetical protein
LOC_Os12g24040OsAffx.31858.1.S1_at11/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040OsAffx.31858.1.S1_x_at9/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_x_at4/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.6286.1.S1_at2/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24040Os.12454.1.S1_a_at1/1112+13658966..13663067Glycosyl hydrolase family 9 protein, expressed
LOC_Os12g24050Os.55727.1.A1_at1/1112+13663619..13668467retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24060OsAffx.7682.1.S1_s_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060OsAffx.7682.1.S1_at11/1112+13671621..13673137hypothetical protein
LOC_Os12g24060Os.23555.1.A1_at7/1112+13671621..13673137hypothetical protein
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6286.1.S1_at--515--9551Chr12:13662015..13662039 (25 bp)
TCTTTCATGGAATTATTGGTGTGGT
LOC_Os12g24040
Os.6286.1.S1_at--1000--10531Chr12:13662018..13662042 (25 bp)
TTCATGGAATTATTGGTGTGGTTTT
LOC_Os12g24040
Os.6286.1.S1_at--273--7691Chr12:13663102..13663126 (25 bp)
GGGTTTTCTATCTAATGTTTGCTGG
NONE
Os.6286.1.S1_at--973--7871Chr12:13663103..13663127 (25 bp)
GGTTTTCTATCTAATGTTTGCTGGC
NONE
Os.6286.1.S1_at--528--6811Chr12:13663104..13663128 (25 bp)
GTTTTCTATCTAATGTTTGCTGGCA
NONE
Os.6286.1.S1_at--199--10391Chr12:13663105..13663129 (25 bp)
TTTTCTATCTAATGTTTGCTGGCAC
NONE
Os.6286.1.S1_at--1053--10311Chr12:13663106..13663130 (25 bp)
TTTCTATCTAATGTTTGCTGGCACT
NONE
Os.6286.1.S1_at--1042--10551Chr12:13663107..13663131 (25 bp)
TTCTATCTAATGTTTGCTGGCACTA
NONE
Os.6286.1.S1_at--395--9551Chr12:13663108..13663132 (25 bp)
TCTATCTAATGTTTGCTGGCACTAA
NONE
Os.6286.1.S1_at--880--10151Chr12:13663110..13663134 (25 bp)
TATCTAATGTTTGCTGGCACTAAGC
NONE
Os.6286.1.S1_at--498--9531Chr12:13663112..13663136 (25 bp)
TCTAATGTTTGCTGGCACTAAGCAC
NONE
Target Sequence 
TCTTTCATGGAATTATTGGTGTGGTTTTTGTGTTTACTTTTTTTTTTTGTTGNGNNNNNTNNNNTNNNGNNGCNGGAACT
GGAGCCTCGGGAGATCAAGGATGTGCTNNGATGCATTTTGCATACCATATTCTTCCNCAGAACCTTGAGCCTTGTTCGGC
CCAAAGACTTTGANTGTNNTTTCTTTGAGATTACCTATGTNAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGT
ANTGAATCNATTTNGGGTTTTCTATCTAATGTTTGCTGGCACTAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis