Browse Element(s) Details


Os.52982.1.S1_at

Description gb:AK070262.1
DB_XREF= gi:32980286
TID=Os.52982.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041L18, full insert sequence.
FL= gb:AK070262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os02g18190OsAffx.2664.1.S1_at11/112+10564185..10564572hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52982.1.S1_at--102--2251Chr02:10541244..10541268 (25 bp)
AAATTAGAATTTGGGTGCGGCTGTC
LOC_Os02g18150
Os.52982.1.S1_at--939--8911Chr02:10541193..10541217 (25 bp)
TGACATAATTTCAGGGTACCCCACT
LOC_Os02g18150
Os.52982.1.S1_at--935--9951Chr02:10541177..10541201 (25 bp)
TACCCCACTTTGTGGAGTGTCCGTG
LOC_Os02g18150
Os.52982.1.S1_at--938--2531Chr02:10541080..10541104 (25 bp)
AACTCTGACTGCGTTTCCGAGACGG
LOC_Os02g18150
Os.52982.1.S1_at--421--4231Chr02:10540920..10540944 (25 bp)
CCGTTGGGTTCGACATGGCCGTAAG
LOC_Os02g18150
Os.52982.1.S1_at--228--7771Chr02:10540896..10540920 (25 bp)
GGTGCGTGCCCCATGGTTAATTAAA
LOC_Os02g18150
Os.52982.1.S1_at--908--10451Chr02:10540876..10540900 (25 bp)
TTAAACTCTCGTTGTAACCTTGTAG
LOC_Os02g18150
Os.52982.1.S1_at--124--7371Chr02:10540809..10540833 (25 bp)
GTGAAAATCCGCATCTAGTCTCCTT
LOC_Os02g18150
Os.52982.1.S1_at--285--3591Chr02:10540757..10540781 (25 bp)
CATTTAGTTTGATTGTGCACGCATA
LOC_Os02g18150
Os.52982.1.S1_at--253--2291Chr02:10540721..10540745 (25 bp)
AAATGCGATGCGAATCTGGTGGAAA
LOC_Os02g18150
Os.52982.1.S1_at--338--231Chr02:10540692..10540716 (25 bp)
ATATTTTGTGCGACTTGCGGATCAA
LOC_Os02g18150
Target Sequence 
AAATTAGAATTTGGGTGCGGCTGTCGCTGTACAGAGGGAATGTTGGTGGCCTGACATAATTTCAGGGTACCCCACTTTGT
GGAGTGTCCGTGTCTCCCCGAAATCCCCGTCCCCGGCCGCGGCCGTCTCTCCCCGCTGCTGTACTTCGCCGCCGCCGCCG
TGCCAACTCTGACTGCGTTTCCGAGACGGTGAGGAGGCTGCTGCTGCTGCTGCTGTTCTCGCGACCGACCGAGAGGCTTC
TCCTCCTCCTCCTCTGCCCTACGCCGCCACGCGCTCGCTCGATCGAGCCGCTCCACGCCGCCGTCGTCGGCAGCGGCCCC
GCCGCCGTTGGGTTCGACATGGCCGTAAGGTGCGTGCCCCATGGTTAATTAAACTCTCGTTGTAACCTTGTAGTTATAGG
GTGTGTAATAATGGAGTAGTTGCGAAAAAACTGAAGTGAAAATCCGCATCTAGTCTCCTTTTGAAGAGACGGACGTGATT
GTGGAATCATTTAGTTTGATTGTGCACGCATATGTTAAATGTCAAATGCGATGCGAATCTGGTGGAAATATAATATTTTG
TGCGACTTGCGGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis