Browse Element(s) Details


OsAffx.2662.1.S1_at

Description tigr:9630.m01710
TID=OsAffx.2662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os02g18190OsAffx.2664.1.S1_at11/112+10564185..10564572hypothetical protein
LOC_Os02g18200NANA2+10569001..10571742retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2662.1.S1_at--38--5533Chr08:4675180..4675481 (25 bp)
GAAACCCTAAAGATTTTAGATGGTG
NONE
OsAffx.2662.1.S1_at--623--10177Chr09:14243490..14243514 (25 bp)
TATACTAAGTTGACTGAGGGCCCAC
NONE
OsAffx.2662.1.S1_at--1079--1837Chr09:14243493..14243516 (24 bp)
ACTAAGTTGACTGAGGGCCCACATT
NONE
OsAffx.2662.1.S1_at--1077--8932Chr05:20152204..20152390 (25 bp)
TGACTGAGGGCCCACATTGCAAATG
NONE
OsAffx.2662.1.S1_at--580--6131Chr02:10546019..10546432 (25 bp)
GAGGGCCCACATTGCAAATGCTTCG
LOC_Os02g18160
OsAffx.2662.1.S1_at--767--3311Chr02:10546420..10546439 (20 bp)
CACATTGCAAATGCTTCGCCGGTAA
LOC_Os02g18160
OsAffx.2662.1.S1_at--259--10731Chr02:10546420..10546443 (24 bp)
TTGCAAATGCTTCGCCGGTAACCCA
LOC_Os02g18160
OsAffx.2662.1.S1_at--1067--471Chr02:10546425..10546449 (25 bp)
ATGCTTCGCCGGTAACCCAAAGAAT
LOC_Os02g18160
OsAffx.2662.1.S1_at--1067--7051Chr02:10546436..10546460 (25 bp)
GTAACCCAAAGAATGGAGTCGCTGA
LOC_Os02g18160
OsAffx.2662.1.S1_at--1035--831Chr02:10546448..10546472 (25 bp)
ATGGAGTCGCTGATACCATCTTCTT
LOC_Os02g18160
OsAffx.2662.1.S1_at--764--8032Chr02:10546450..10546474 (25 bp)
GGAGTCGCTGATACCATCTTCTTCT
LOC_Os02g18160
Target Sequence 
GAAACCCTAAAGATTTTAGATGGTGATTTTTATACTAAGTTGACTGAGGGCCCACATTGCAAATGCTTCGCCGGTAACCC
AAAGAATGGAGTCGCTGATACCATCTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis