Browse Element(s) Details


OsAffx.12096.1.S1_at

Description tigr:9630.m01709
TID=OsAffx.12096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1814010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein
LOC_Os02g18180Os.49251.1.S1_at11/112+10552436..10558879ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os02g18190OsAffx.2664.1.S1_at11/112+10564185..10564572hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12096.1.S1_at--872--1011Chr02:10538292..10538316 (25 bp)
AGGTATTGCCTCTACCAATTGGTAA
LOC_Os02g18140
OsAffx.12096.1.S1_at--992--10511Chr02:10538368..10538392 (25 bp)
TTCAGAAAGTCTGTCCATGCGCACT
LOC_Os02g18140
OsAffx.12096.1.S1_at--255--8091Chr02:10538422..10538446 (25 bp)
GGACCTCCCATGCTTTTTTGAGTTC
LOC_Os02g18140
OsAffx.12096.1.S1_at--149--2511Chr02:10538459..10538483 (25 bp)
AACATGTTCTTAGTCGTCTTGCCTG
LOC_Os02g18140
OsAffx.12096.1.S1_at--53--9811Chr02:10538484..10538508 (25 bp)
TAACGTCCATTCCACTACGAGTGTG
LOC_Os02g18140
OsAffx.12096.1.S1_at--78--6131Chr02:10538502..10538526 (25 bp)
GAGTGTGGTGCAGTAACCTTCCAGC
LOC_Os02g18140
OsAffx.12096.1.S1_at--735--4311Chr02:10538518..10538542 (25 bp)
CCTTCCAGCTCTACTTCGATTAAAA
LOC_Os02g18140
OsAffx.12096.1.S1_at--1111--10511Chr02:10538585..10538609 (25 bp)
TTCACTGGCAATCGTCCTCAAAGAG
LOC_Os02g18140
OsAffx.12096.1.S1_at--366--2691Chr02:10538677..10538701 (25 bp)
AAGCATTGATGACCTCGTAACGCCT
LOC_Os02g18140
OsAffx.12096.1.S1_at--891--7051Chr02:10538693..10538717 (25 bp)
GTAACGCCTGAGTATCTTCCTGCTA
LOC_Os02g18140
OsAffx.12096.1.S1_at--246--10151NONE
TATCGTCCCTGCCAGGATGGAGCAA
NONE
Target Sequence 
AGGTATTGCCTCTACCAATTGGTAAATTTGATTGCCTCGAAGAATTGGACGTGGCTGGTTACCAGATATTCAATGCTTCA
GAAAGTCTGTCCATGCGCACTCTCAAGGAGCTCAAGCTATGCAATTCTGGGGACCTCCCATGCTTTTTTGAGTTCCCCTC
CCTTACCAACATGTTCTTAGTCGTCTTGCCTGTAACGTCCATTCCACTACGAGTGTGGTGCAGTAACCTTCCAGCTCTAC
TTCGATTAAAAATTTATAGCTGTGCGAACCTTGAATTTATTGGGGAATCAGTCTTCACTGGCAATCGTCCTCAAAGAGAC
AGTTGCAGCACTACAACATTCGCATCCCTTATTTCCCTAGAAATTTGTGGCTGCGAAAAGCTGACAAGCATTGATGACCT
CGTAACGCCTGAGTATCTTCCTGCTATTGAGAAAATTGATGTTAGCTCTTGTGTCAAGCTATCGTCCCTGCCAGGATGGA
GCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis