Browse Element(s) Details


Os.10287.1.S1_at

Description gb:AK107894.1
DB_XREF= gi:32993103
TID=Os.10287.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (P0446F04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E12, full insert sequence.
FL= gb:AK107894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0137011/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01340Os.30269.1.S1_at11/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01340Os.23988.1.A1_at10/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01350NANA7+224327..224677hypothetical protein
LOC_Os07g01360Os.51841.1.S1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.45902.1.A1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.10263.1.S1_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01370Os.10287.1.S1_at11/117+234225..235743Peroxidase 1 precursor, putative, expressed
LOC_Os07g01380OsAffx.16028.1.S1_x_at11/117+237814..239244Peroxidase 1 precursor, putative
LOC_Os07g01390Os.26886.3.S1_x_at7/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390Os.26886.1.S1_x_at5/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390OsAffx.16244.1.S1_x_at1/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01400OsAffx.16029.1.S1_x_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01400OsAffx.16029.1.S1_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01410Os.20290.1.S1_at11/117+258011..261041Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10287.1.S1_at--6--5951Chr07:235334..235358 (25 bp)
GAGCACCATTGACGTGCTCACCGGG
LOC_Os07g01370
Os.10287.1.S1_at--207--8171Chr07:235375..235399 (25 bp)
GGAACAAGTGCTACGCCATCAACAT
LOC_Os07g01370
Os.10287.1.S1_at--654--7311Chr07:235382..235406 (25 bp)
GTGCTACGCCATCAACATATAATAA
LOC_Os07g01370
Os.10287.1.S1_at--1137--353Chr07:235400..235424 (25 bp)
ATAATAAAGTAACTGCATCTGCATG
LOC_Os07g01370
Os.10287.1.S1_at--225--651Chr07:235422..235446 (25 bp)
ATGCATGCGCACTAATCAAAGGTTC
LOC_Os07g01370
Os.10287.1.S1_at--297--6531Chr07:235447..235471 (25 bp)
GATTTATTTGGTTTCTTCCGTCAAT
LOC_Os07g01370
Os.10287.1.S1_at--1149--9731Chr07:235478..235502 (25 bp)
TAATTGGTTTCAGTTTATTTGCAAA
LOC_Os07g01370
Os.10287.1.S1_at--127--8471Chr07:235524..235548 (25 bp)
TGGGTACAGTACAGATGAACGAATC
LOC_Os07g01370
Os.10287.1.S1_at--496--5451Chr07:235540..235564 (25 bp)
GAACGAATCCATCACTGCGTACTAT
LOC_Os07g01370
Os.10287.1.S1_at--505--4331Chr07:235548..235572 (25 bp)
CCATCACTGCGTACTATGTATATGT
LOC_Os07g01370
Os.10287.1.S1_at--113--8671Chr07:235572..235596 (25 bp)
TGTGTAACTGATGTACTATGTACGT
LOC_Os07g01370
Target Sequence 
GAGCACCATTGACGTGCTCACCGGGGCGCAGGGCGAGATCAGGAACAAGTGCTACGCCATCAACATATAATAAAGTAACT
GCATCTGCATGCATGCGCACTAATCAAAGGTTCGATTTATTTGGTTTCTTCCGTCAATTTTTTTTAATTGGTTTCAGTTT
ATTTGCAAAAAAGATCGTGTTAATTTGGTTTGGGTACAGTACAGATGAACGAATCCATCACTGCGTACTATGTATATGTG
TGTAACTGATGTACTATGTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis