Browse Element(s) Details


Os.20290.1.S1_at

Description gb:AK108824.1
DB_XREF= gi:32994033
TID=Os.20290.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D24331(R1744),AU083492(R1744)~peroxidase-like protein (P0446F04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-F05, full insert sequence.
FL= gb:AK108824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0141011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01370Os.10287.1.S1_at11/117+234225..235743Peroxidase 1 precursor, putative, expressed
LOC_Os07g01380OsAffx.16028.1.S1_x_at11/117+237814..239244Peroxidase 1 precursor, putative
LOC_Os07g01390Os.26886.3.S1_x_at7/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390Os.26886.1.S1_x_at5/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390OsAffx.16244.1.S1_x_at1/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01400OsAffx.16029.1.S1_x_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01400OsAffx.16029.1.S1_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01410Os.20290.1.S1_at11/117+258011..261041Peroxidase family protein, expressed
LOC_Os07g01420OsAffx.28221.1.S1_at11/117+262824..263949Peroxidase family protein
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20290.1.S1_at--608--7171Chr07:260560..260584 (25 bp)
GTCTCCTTCGTCAACATGAGCAAGA
LOC_Os07g01410
Os.20290.1.S1_at--102--9331Chr07:260602..260626 (25 bp)
TCCCACGGCGAGATCAGGCACAAGT
LOC_Os07g01410
Os.20290.1.S1_at--502--7311Chr07:260728..260752 (25 bp)
GTGCTGCTCTTCTGATCGATCCATC
LOC_Os07g01410
Os.20290.1.S1_at--2--6431Chr07:260757..260781 (25 bp)
GATCTCACACATTTTACATGCATGC
LOC_Os07g01410
Os.20290.1.S1_at--293--4991Chr07:260776..260800 (25 bp)
GCATGCGTGCGTGCAAATTGGACAA
LOC_Os07g01410
Os.20290.1.S1_at--193--1971Chr07:260809..260833 (25 bp)
ACTGATTGTTCGTACGTCGTTTCGT
LOC_Os07g01410
Os.20290.1.S1_at--1145--6831Chr07:260827..260851 (25 bp)
GTTTCGTCGTCATTTCTGGATTTGT
LOC_Os07g01410
Os.20290.1.S1_at--569--10731Chr07:260892..260916 (25 bp)
TTGTCATGTGTGCAGGGTTATAACC
LOC_Os07g01410
Os.20290.1.S1_at--588--5591Chr07:260967..260991 (25 bp)
GAAATCTCCGATTGTTGTAACTGTG
LOC_Os07g01410
Os.20290.1.S1_at--742--9791Chr07:260984..261008 (25 bp)
TAACTGTGGCCGGACGGACGTCAAT
LOC_Os07g01410
Os.20290.1.S1_at--461--1831Chr07:260997..261021 (25 bp)
ACGGACGTCAATCAAGGGCCAAATG
LOC_Os07g01410
Target Sequence 
GTCTCCTTCGTCAACATGAGCAAGATCGGCGTGCTCACCCACTCCCACGGCGAGATCAGGCACAAGTGCTCTGCTGTCAA
CCCGCCGTCGCCGCCGTCCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGG
GGGTCCTCNGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGAC
AAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTG
ATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCT
TGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis