Browse Element(s) Details


OsAffx.16029.1.S1_at

Description tigr:9635.m00042
TID=OsAffx.16029.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0140011/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01360Os.51841.1.S1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.45902.1.A1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.10263.1.S1_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01370Os.10287.1.S1_at11/117+234225..235743Peroxidase 1 precursor, putative, expressed
LOC_Os07g01380OsAffx.16028.1.S1_x_at11/117+237814..239244Peroxidase 1 precursor, putative
LOC_Os07g01390Os.26886.3.S1_x_at7/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390Os.26886.1.S1_x_at5/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390OsAffx.16244.1.S1_x_at1/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01400OsAffx.16029.1.S1_x_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01400OsAffx.16029.1.S1_at11/117+251117..252166Peroxidase 1 precursor, putative, expressed
LOC_Os07g01410Os.20290.1.S1_at11/117+258011..261041Peroxidase family protein, expressed
LOC_Os07g01420OsAffx.28221.1.S1_at11/117+262824..263949Peroxidase family protein
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16029.1.S1_at--989--7151Chr07:251678..251702 (25 bp)
GTCTCCCGCATGGTGGACTCCTTCG
LOC_Os07g01400
OsAffx.16029.1.S1_at--211--9431Chr07:251757..251781 (25 bp)
TCGGGAAGGCGCACTGCCCAAACTT
LOC_Os07g01400
OsAffx.16029.1.S1_at--377--5811Chr07:251909..251933 (25 bp)
GACCCCGGGAGCTTCACGAGGTTCG
LOC_Os07g01400
OsAffx.16029.1.S1_at--145--4911Chr07:251919..251943 (25 bp)
GCTTCACGAGGTTCGACAGCAGCTA
LOC_Os07g01400
OsAffx.16029.1.S1_at--256--9371Chr07:251931..251955 (25 bp)
TCGACAGCAGCTACTTCCGGCAGGT
LOC_Os07g01400
OsAffx.16029.1.S1_at--574--9891Chr07:251942..251966 (25 bp)
TACTTCCGGCAGGTGGTGAGGAGGC
LOC_Os07g01400
OsAffx.16029.1.S1_at--1074--7791Chr07:251979..252003 (25 bp)
GGTCGGACGCCTGCCTCATGGACCA
LOC_Os07g01400
OsAffx.16029.1.S1_at--205--791Chr07:252044..252068 (25 bp)
AGGTACGACGGCCACTTCTTCCAGG
LOC_Os07g01400
OsAffx.16029.1.S1_at--832--5731Chr07:252050..252074 (25 bp)
GACGGCCACTTCTTCCAGGATTTCG
LOC_Os07g01400
OsAffx.16029.1.S1_at--994--2031Chr07:252057..252081 (25 bp)
ACTTCTTCCAGGATTTCGCTCACTC
LOC_Os07g01400
OsAffx.16029.1.S1_at--346--6531Chr07:252068..252092 (25 bp)
GATTTCGCTCACTCCATGGTGAAGA
LOC_Os07g01400
Target Sequence 
GTCTCCCGCATGGTGGACTCCTTCGCCGCCAAGGGCCTCGACGTCAAGGACCTCGTCGTGCTCTCCGCCGCCCACACCCT
CGGGAAGGCGCACTGCCCAAACTTCGCCGACCGCCTCTACGGCCCCGGCGCCGACCCGCCGCTCAAGCTCGACGGCGCGT
ACGCCGACAGGCTGCGGAAGCAGTGCAAGGAGGGCGCCCCGCCGTACGACGGGAACGTGACGGCGGAGATGGACCCCGGG
AGCTTCACGAGGTTCGACAGCAGCTACTTCCGGCAGGTGGTGAGGAGGCGGGCGCTGCTCCGGTCGGACGCCTGCCTCAT
GGACCACCCCTTCACCAGCGCCTACATCCGCCTCGCCGCCACCGGCAGGTACGACGGCCACTTCTTCCAGGATTTCGCTC
ACTCCATGGTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis