Browse Element(s) Details


OsAffx.12476.1.S1_at

Description tigr:9630.m04181
TID=OsAffx.12476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:K7M2.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4346011/11Helicase conserved C-terminal domain containing protein
LOC_Os02g207201/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43430Os.51823.1.S1_at11/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430OsAffx.22910.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430Os.49550.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43440OsAffx.24700.1.S1_at11/112+26208407..26209406hypothetical protein
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed
LOC_Os02g43480Os.25217.1.S1_at11/112+26237799..26240283expressed protein
LOC_Os02g43490OsAffx.24701.1.S1_at9/112+26240930..26242296hypothetical protein
LOC_Os02g43490OsAffx.13010.1.S1_x_at1/112+26240930..26242296hypothetical protein
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12476.1.S1_at--736--5591Chr02:26231849..26231873 (25 bp)
GAAATTGTCCGTTTGTGTGAAGCCA
LOC_Os02g43460
OsAffx.12476.1.S1_at--163--5871Chr02:26231879..26231903 (25 bp)
GAGCGAGTACTTGTTTTCAGTCAAT
LOC_Os02g43460
OsAffx.12476.1.S1_at--679--8151Chr02:26231987..26232011 (25 bp)
GGAAATGTCCTTGTTCAAAATCGAG
LOC_Os02g43460
OsAffx.12476.1.S1_at--321--2711Chr02:26232012..26232036 (25 bp)
AAGCTTTGATGGAGGCCTTCAATGA
LOC_Os02g43460
OsAffx.12476.1.S1_at--1162--4711Chr02:26232081..26232105 (25 bp)
GCTGTGAAGGCATTACACTTATCGG
LOC_Os02g43460
OsAffx.12476.1.S1_at--650--1911Chr02:26232112..26232136 (25 bp)
ACGTGTGGTTCTCCTTGATGTTGTA
LOC_Os02g43460
OsAffx.12476.1.S1_at--694--10771Chr02:26232132..26232156 (25 bp)
TTGTATGGAACCCTTCAGTTGGAAG
LOC_Os02g43460
OsAffx.12476.1.S1_at--680--891Chr02:26232159..26232183 (25 bp)
AGGCGATTGGCCGAGCTTATAGAAT
LOC_Os02g43460
OsAffx.12476.1.S1_at--439--5315Chr02:26232265..26232289 (25 bp)
GAAGGATCATATGTCCAAACTGCTA
LOC_Os02g43460
OsAffx.12476.1.S1_at--871--10351Chr02:26232290..26232314 (25 bp)
TTTTCAAAAGAACCCCATGCTGCAG
LOC_Os02g43460
OsAffx.12476.1.S1_at--1027--4171Chr02:26232303..26232327 (25 bp)
CCCATGCTGCAGGATTCAACTTGTC
LOC_Os02g43460
Target Sequence 
GAAATTGTCCGTTTGTGTGAAGCCATGAAAGAGCGAGTACTTGTTTTCAGTCAATATCTTGAACCACTATCTCTGATCAT
GGACCAACTTAGTAAAATGTTCAATTGGACAGAAGGTGAGGAGATCCTACTGATGAGTGGAAATGTCCTTGTTCAAAATC
GAGAAGCTTTGATGGAGGCCTTCAATGACATGAAAAGCAATGCCAAGGTAATGCTTGCATCAACGAAGGCATGCTGTGAA
GGCATTACACTTATCGGGGCATCACGTGTGGTTCTCCTTGATGTTGTATGGAACCCTTCAGTTGGAAGGCAGGCGATTGG
CCGAGCTTATAGAATTGGTCAAGAGAAGATTGTGTATACATACAATCTAATCACAGAAGGGACAAAGGAGAAGGACAAAT
ATGATAGGCAAGCTAAGAAGGATCATATGTCCAAACTGCTATTTTCAAAAGAACCCCATGCTGCAGGATTCAACTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis