Browse Element(s) Details


OsAffx.24700.1.S1_at

Description tigr:9630.m04179
TID=OsAffx.24700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4344011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43400OsAffx.14491.1.S1_at1/112+26186104..26189068retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43410Os.10018.1.S1_at11/112+26194172..26196235transposon protein, putative, unclassified, expressed
LOC_Os02g43420OsAffx.24699.1.S1_at11/112+26201282..26201518hypothetical protein
LOC_Os02g43430Os.51823.1.S1_at11/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430OsAffx.22910.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430Os.49550.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43440OsAffx.24700.1.S1_at11/112+26208407..26209406hypothetical protein
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24700.1.S1_at--58--8611Chr02:26209352..26209376 (25 bp)
TGGTCGCTGGCTGGCAACCACTGTG
LOC_Os02g43440
OsAffx.24700.1.S1_at--307--9531Chr02:26209302..26209326 (25 bp)
TCTCAACCCAGACTATAGCCATTAC
LOC_Os02g43440
OsAffx.24700.1.S1_at--53--9991Chr02:26209287..26209311 (25 bp)
TAGCCATTACGTAAGCAACTCGCGG
LOC_Os02g43440
OsAffx.24700.1.S1_at--558--4431Chr02:26209253..26209277 (25 bp)
GCCATCGTTTGCTTCATGATTGAAT
LOC_Os02g43440
OsAffx.24700.1.S1_at--1000--2571Chr02:26209226..26209250 (25 bp)
AACGGTGGCGCTGAGGACAACAACA
LOC_Os02g43440
OsAffx.24700.1.S1_at--581--2111Chr02:26209204..26209228 (25 bp)
ACATGATCTCCTTTGTACAGTTCCC
LOC_Os02g43440
OsAffx.24700.1.S1_at--1029--9811Chr02:26209117..26209141 (25 bp)
TAACAACGATCTCGGTGCAGACGGC
LOC_Os02g43440
OsAffx.24700.1.S1_at--637--871Chr02:26209091..26209115 (25 bp)
ATGGCGAACACTAGCGTTGTGACCT
LOC_Os02g43440
OsAffx.24700.1.S1_at--728--6631Chr02:26209076..26209100 (25 bp)
GTTGTGACCTGCTTCTGGCCACTAG
LOC_Os02g43440
OsAffx.24700.1.S1_at--204--7731Chr02:26208592..26208616 (25 bp)
GGTGGTAGTCGGTGCTCACAAGTAA
LOC_Os02g43440
OsAffx.24700.1.S1_at--464--5311Chr02:26208493..26208517 (25 bp)
GAAGGTTGTGCTGCCATGAAAGACG
LOC_Os02g43440
Target Sequence 
TGGTCGCTGGCTGGCAACCACTGTGTGCCTCCACCTTGCTCTCCAACGCGTCTCAACCCAGACTATAGCCATTACGTAAG
CAACTCGCGGGCCCTCTGCGCCATCGTTTGCTTCATGATTGAATGCAACGGTGGCGCTGAGGACAACAACATGATCTCCT
TTGTACAGTTCCCGCACGATTCCACAACATCGACCCCCATGATCACTATAACAATAACAACTAGCAACACAACCGTAACA
ACGATCTCGGTGCAGACGGCCATGGCGAACACTAGCGTTGTGACCTGCTTCTGGCCACTAGCACAGACACATCACCGATT
TGGGGTTGGAGTAGAAAGGGACAAGAGGGATGGCAAGGGGTGGCGACGCGCCGGGCCGAGCGAGGGTGGTAGTCGGTGCT
CACAAGTAAGGGGTAAGATAGAAGAGATAGTAAAGAAGGCAGTGGTGCTGCGGAGTCAAGGAAGGAGAAAAGCAAGCAAC
GAAGAAGGTTGTGCTGCCATGAAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis