Browse Element(s) Details


Os.10018.1.S1_at

Description gb:AK063464.1
DB_XREF= gi:32973482
TID=Os.10018.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H05, full insert sequence.
FL= gb:AK063464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4341011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43380NANA2+26170530..26170868hypothetical protein
LOC_Os02g43390OsAffx.22848.3.S1_x_at3/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_at2/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.11409.1.S1_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_x_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43400OsAffx.14491.1.S1_at1/112+26186104..26189068retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43410Os.10018.1.S1_at11/112+26194172..26196235transposon protein, putative, unclassified, expressed
LOC_Os02g43420OsAffx.24699.1.S1_at11/112+26201282..26201518hypothetical protein
LOC_Os02g43430Os.51823.1.S1_at11/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430OsAffx.22910.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430Os.49550.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43440OsAffx.24700.1.S1_at11/112+26208407..26209406hypothetical protein
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10018.1.S1_at--492--2911Chr02:26194579..26194603 (25 bp)
AAGGAGGCTGCCTTCATGGTGCCTG
LOC_Os02g43410
Os.10018.1.S1_at--262--9131Chr02:26194556..26194580 (25 bp)
TGCTGTTGCGTCTGGGCTCATGTGT
LOC_Os02g43410
Os.10018.1.S1_at--1100--8651Chr02:26194534..26194558 (25 bp)
TGTGGCGATGGCATTTGGACCTTCC
LOC_Os02g43410
Os.10018.1.S1_at--794--3691Chr02:26194503..26194527 (25 bp)
CTATCCTTGCTCTCGCTAAGATTAA
LOC_Os02g43410
Os.10018.1.S1_at--1028--9331Chr02:26194491..26194515 (25 bp)
TCGCTAAGATTAAGCCACCGATCTG
LOC_Os02g43410
Os.10018.1.S1_at--434--10391Chr02:26194368..26194392 (25 bp)
TTTTGGTTGTAGTGAGCTGCTGTTT
LOC_Os02g43410
Os.10018.1.S1_at--855--4771Chr02:26194353..26194377 (25 bp)
GCTGCTGTTTGCCTATGATCCAAGT
LOC_Os02g43410
Os.10018.1.S1_at--1085--6351Chr02:26194337..26194361 (25 bp)
GATCCAAGTCATGTTTGTGTTTTAA
LOC_Os02g43410
Os.10018.1.S1_at--1042--10451Chr02:26194311..26194335 (25 bp)
TTACCTATCGAATTAGCTGTGTTTG
LOC_Os02g43410
Os.10018.1.S1_at--1124--9891Chr02:26194192..26194216 (25 bp)
TACTACACTGTAATCTCAACTAAGG
LOC_Os02g43410
Os.10018.1.S1_at--118--3271Chr02:26194176..26194200 (25 bp)
CAACTAAGGTTGTGTTCGAGTATCA
LOC_Os02g43410
Target Sequence 
AAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTAT
CCTTGCTCTCGCTAAGATTAAGCCACCGATCTGCATGAANTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTTC
ATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCT
ATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGA
ATTGTTTAGTTTGGCATACATAAAATATGTTATAACTTTTTTTACTCACATGTATAGGATTGATGACTACTACACTGTAA
TCTCAACTAAGGTTGTGTTCGAGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis