Browse Element(s) Details


Os.51823.1.S1_at

Description gb:AK063883.1
DB_XREF= gi:32973901
TID=Os.51823.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F10, full insert sequence.
FL= gb:AK101160.1 gb:AK063883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4343011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43390OsAffx.22848.3.S1_x_at3/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_at2/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.11409.1.S1_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_x_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43400OsAffx.14491.1.S1_at1/112+26186104..26189068retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43410Os.10018.1.S1_at11/112+26194172..26196235transposon protein, putative, unclassified, expressed
LOC_Os02g43420OsAffx.24699.1.S1_at11/112+26201282..26201518hypothetical protein
LOC_Os02g43430Os.51823.1.S1_at11/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430OsAffx.22910.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43430Os.49550.1.S1_at1/112+26203118..26207136Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os02g43440OsAffx.24700.1.S1_at11/112+26208407..26209406hypothetical protein
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51823.1.S1_at--187--3271Chr02:26203691..26203715 (25 bp)
CAACAGCTGCCTTGCAAAACATGCA
LOC_Os02g43430
Os.51823.1.S1_at--850--2431Chr02:26203667..26203691 (25 bp)
AAAAGACCGCCCAACTATGAGAGAG
LOC_Os02g43430
Os.51823.1.S1_at--966--8051Chr02:26203577..26203601 (25 bp)
GGAGAGCTCACCACCTCATGAGGTT
LOC_Os02g43430
Os.51823.1.S1_at--739--8611Chr02:26203559..26203583 (25 bp)
TGAGGTTCCTGGGAAGCCAACCGCA
LOC_Os02g43430
Os.51823.1.S1_at--46--1492Chr04:26296225..26296684 (25 bp)
AGCAAGGCGGCGGATGCTTCACCTG
NONE
Os.51823.1.S1_at--584--9091Chr02:26203424..26203448 (25 bp)
TGCTCCAACTCCAACATAAACTTCT
LOC_Os02g43430
Os.51823.1.S1_at--895--2511Chr02:26203406..26203430 (25 bp)
AACTTCTGCAAGAGTTGGTGTTCTT
LOC_Os02g43430
Os.51823.1.S1_at--816--7751Chr02:26203390..26203414 (25 bp)
GGTGTTCTTGACTGTATTATTCTGA
LOC_Os02g43430
Os.51823.1.S1_at--595--7031Chr02:26203358..26203382 (25 bp)
GTAAAGGTAGGTCCATTAGTCAACT
LOC_Os02g43430
Os.51823.1.S1_at--361--8891Chr02:26203225..26203249 (25 bp)
TGAGGAGTTCTTTGTGGTGTCTTTG
LOC_Os02g43430
Os.51823.1.S1_at--1131--8731Chr02:26203189..26203213 (25 bp)
TGTAATTCTGCTTTCTCTTTTTTGT
LOC_Os02g43430
Target Sequence 
CAACAGCTGCCTTGCAAAACATGCAAAAGACCGCCCAACTATGAGAGAGGTGGTGGAGAGCATAAAGCAAGTGATGCAGC
ACAACGAATTGGATGGTGACGTCGAGGCATCAGGGGAGAGCTCACCACCTCATGAGGTTCCTGGGAAGCCAACCGCAGAT
GATGTTGCTGTGGCGGCAGCAAGGCGGCGGATGCTTCACCTGGCTGCGCTAGGTGAAAATGCAAACAATATTGCGAGGAG
GAGATTCATGCTCATGAGGGCAGCTGCTGCTCCAACTCCAACATAAACTTCTGCAAGAGTTGGTGTTCTTGACTGTATTA
TTCTGATGTGCTTGTAAAGGTAGGTCCATTAGTCAACTTTTTTATCACTATAAATACTTTAAAAAGATCCAACATTTTGC
TTACTGTAGATTTGTAATACACAATTCTGTAGGTTCAGTCAAACATCAGACTTACAGTTAATACTGTGAGGAGTTCTTTG
TGGTGTCTTTGTAAATACAAAATGTAATTCTGCTTTCTCTTTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis