Browse Element(s) Details


Os.49550.1.S1_at

Description gb:AK102696.1
DB_XREF= gi:32987905
TID=Os.49550.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103F22, full insert sequence.
FL= gb:AK102696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2912011/11GRAM domain-containing protein, putative, expressed
LOC_Os02g434301/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein
LOC_Os09g29120Os.49550.1.S1_at11/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29120OsAffx.2325.1.A1_at2/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29130Os.57566.1.S1_at9/119+17702753..17704610ZF-HD protein dimerisation region containing protein, expressed
LOC_Os09g29140NANA9+17710052..17711694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49550.1.S1_at--608--9851Chr09:17693986..17694006 (21 bp)
TACAAGGTGGCGATTCCTCTGCACA
LOC_Os09g29120
Os.49550.1.S1_at--554--1451Chr09:17694052..17694076 (25 bp)
AGAAGTTCATCCAGCTCGTGTCGGT
LOC_Os09g29120
Os.49550.1.S1_at--610--8531Chr09:17694076..17694100 (25 bp)
TGGACCGCCATGAGTTCTGGTTGAT
LOC_Os09g29120
Os.49550.1.S1_at--230--3691Chr09:17694104..17694128 (25 bp)
CTTTGTGAACTACGACAGCGCGGTC
LOC_Os09g29120
Os.49550.1.S1_at--157--7091Chr09:17694126..17694150 (25 bp)
GTCAAGCACTTGCAGGAGGCTCTCA
LOC_Os09g29120
Os.49550.1.S1_at--417--3371Chr09:17694162..17694186 (25 bp)
CACCTGCAAGCGTGAGTGCGTGACA
LOC_Os09g29120
Os.49550.1.S1_at--1109--4571Chr09:17694207..17694231 (25 bp)
GCGCTAATCTTCGTTGTTCGCTGAT
LOC_Os09g29120
Os.49550.1.S1_at--343--6711Chr09:17694222..17694246 (25 bp)
GTTCGCTGATTGACACGGCGTGATT
LOC_Os09g29120
Os.49550.1.S1_at--863--10251Chr09:17694261..17694285 (25 bp)
TTTGTGCTCTAGTTCTTCTTGCTGA
LOC_Os09g29120
Os.49550.1.S1_at--777--7651Chr09:17694325..17694349 (25 bp)
GGGATTGCGGATATCTTCGATTGTT
LOC_Os09g29120
Os.49550.1.S1_at--885--8854Chr09:17694459..17694483 (25 bp)
TGATCCTTGAAGTTTTGCTCCATGA
LOC_Os09g29120
Target Sequence 
TACAAGGTGGCGATTCCTCTGCACAGGCTGAGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCAT
CCAGCTCGTGTCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTCAAGCACTTGCAGG
AGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGAGTGCGTGACAGGCGGCATCGGCATTTGCCCGCGCTAATCTTCGTT
GTTCGCTGATTGACACGGCGTGATTTGTGTCTTGGGGTGTTTGTGCTCTAGTTCTTCTTGCTGAGGATATGTTTATGAGT
GCATCGGTCACTTGAGATTGTTTGGGATTGCGGATATCTTCGATTGTTTGGAGATACATGTCACACATCTAAGATTCCTG
AAGCTCTTCACTTAAAATCTTATAGGTTTTGGAAACTGTGGTTGCCTTATTTTTTTTTTTGAGAGAATAGCCAACATGAT
CCTTGAAGTTTTGCTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis