Browse Element(s) Details


Os.57566.1.S1_at

Description gb:AK108246.1
DB_XREF= gi:32993455
TID=Os.57566.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H06, full insert sequence.
FL= gb:AK108246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g291309/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein
LOC_Os09g29120Os.49550.1.S1_at11/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29120OsAffx.2325.1.A1_at2/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29130Os.57566.1.S1_at9/119+17702753..17704610ZF-HD protein dimerisation region containing protein, expressed
LOC_Os09g29140NANA9+17710052..17711694hypothetical protein
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57566.1.S1_at--889--2271Chr09:17703302..17703326 (25 bp)
AAATGCATTTGATCTCATCGTCGGC
LOC_Os09g29130
Os.57566.1.S1_at--91--3551Chr09:17703287..17703311 (25 bp)
CATCGTCGGCATGCATGACCAAGTT
LOC_Os09g29130
Os.57566.1.S1_at--118--1251Chr09:17703266..17703290 (25 bp)
AGTTGTGGGACGACGCATGCATCCA
LOC_Os09g29130
Os.57566.1.S1_at--153--10011Chr09:17703227..17703251 (25 bp)
TAGCTGAGCTGATCGACCGGCCGTG
LOC_Os09g29130
Os.57566.1.S1_at--196--111Chr09:17703091..17703115 (25 bp)
ATTCGTTCTCGGCTCTAGTAGGTGG
LOC_Os09g29130
Os.57566.1.S1_at--1111--10711Chr09:17703041..17703065 (25 bp)
TTGCTCGTGCTGTTTAATTCCTATG
LOC_Os09g29130
Os.57566.1.S1_at--940--8191NONE
GGCCATTTGCCGATTTGGTTTTTCT
NONE
Os.57566.1.S1_at--797--7611NONE
GGGAATGTCCCTGATGTTTCAAGTG
NONE
Os.57566.1.S1_at--697--8091Chr09:17702860..17702884 (25 bp)
GGACCTGCGCGCTGGGATAATTTTA
LOC_Os09g29130
Os.57566.1.S1_at--446--9731Chr09:17702843..17702867 (25 bp)
TAATTTTACCCATGGGTCGGGCCAT
LOC_Os09g29130
Os.57566.1.S1_at--713--2771Chr09:17702756..17702780 (25 bp)
AAGATAGGCCACTGTTGCATTCCTT
LOC_Os09g29130
Target Sequence 
AAATGCATTTGATCTCATCGTCGGCATGCATGACCAAGTTGTGGGACGACGCATGCATCCATGTCCATCCCAAGCTAGCT
GAGCTGATCGACCGGCCGTGGCTTAGCCACCCGGACCCCGGTATGGTAGGTNCCTGAACCTTATTTATTTAGAGTTGGAC
TTAATTAATTGGTGGCTTAGGTTAATCTGTAGCAAGAGAGACTGAGAGAGCATTCGTTCTCGGCTCTAGTAGGTGGTTCT
TTCTTCTTTTCATTTTAACTGTTGCTCGTGCTGTTTAATTCCTATGCATGGCTTGGCCATTTGCCGATTTGGTTTTTCTT
GGGAATGTCCCTGATGTTTCAAGTGATCGATCAGCGCAGGTGAGGAATTGTGTCTGGGGATTGGGGCTAGCTAGAGTAGC
TGCATGGATTCAGTGTATGTGCTCTTATATTTTTTGTGGTTGGGACCTGCGCGCTGGGATAATTTTACCCATGGGTCGGG
CCATTCGTCTAGGTTTGCTAGTAGCAATAGTTTGTTGGTTACTACGGAGTACTGCCACTCCTAAAAAAGATAGGCCACTG
TTGCATTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis