Browse Element(s) Details


Os.18607.1.S1_at

Description gb:AK063940.1
DB_XREF= gi:32973958
TID=Os.18607.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsCycD mRNA for cyclin, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E03, full insert sequence.
FL= gb:AB080248.1 gb:AK102698.1 gb:AK063940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2910011/11Cyclin delta-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified
LOC_Os09g29100Os.18607.1.S1_at11/119+17679695..17682506Cyclin delta-2, putative, expressed
LOC_Os09g29110OsAffx.17959.1.S1_at11/119+17683689..17684432hypothetical protein
LOC_Os09g29120Os.49550.1.S1_at11/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29120OsAffx.2325.1.A1_at2/119+17693147..17694485GRAM domain-containing protein, putative, expressed
LOC_Os09g29130Os.57566.1.S1_at9/119+17702753..17704610ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18607.1.S1_at--18--9971Chr09:17681906..17681930 (25 bp)
TAGCTCCCCGGTTAGCAGCAAGAGG
LOC_Os09g29100
Os.18607.1.S1_at--424--2391Chr09:17681995..17682019 (25 bp)
AAACTGATCGTGCATCTCTCTTTCT
LOC_Os09g29100
Os.18607.1.S1_at--805--5131Chr09:17682044..17682068 (25 bp)
GCAAATGACTGTGGAGCCTTTCGAT
LOC_Os09g29100
Os.18607.1.S1_at--384--5871Chr09:17682057..17682081 (25 bp)
GAGCCTTTCGATGCCGTATGGGAGC
LOC_Os09g29100
Os.18607.1.S1_at--142--5191Chr09:17682112..17682136 (25 bp)
GCAAGGCATTTTCGACATGGCAACA
LOC_Os09g29100
Os.18607.1.S1_at--180--1031Chr09:17682169..17682193 (25 bp)
AGGTAGACATGTGCTCCAATATTTT
LOC_Os09g29100
Os.18607.1.S1_at--973--5131Chr09:17682325..17682349 (25 bp)
GCAAAGCGAGCTAGGCACTGACACT
LOC_Os09g29100
Os.18607.1.S1_at--932--8951Chr09:17682343..17682367 (25 bp)
TGACACTCCAGATGTCCTGCGTGTG
LOC_Os09g29100
Os.18607.1.S1_at--152--4291Chr09:17682358..17682382 (25 bp)
CCTGCGTGTGTTTCAGTTTTGCGTT
LOC_Os09g29100
Os.18607.1.S1_at--21--10271Chr09:17682375..17682399 (25 bp)
TTTGCGTTGTTCTGTAATTTCCCCT
LOC_Os09g29100
Os.18607.1.S1_at--575--10651Chr09:17682393..17682417 (25 bp)
TTCCCCTGCTTAATTCCTTTGTGAA
LOC_Os09g29100
Target Sequence 
TAGCTCCCCGGTTAGCAGCAAGAGGAGGAAGATTAGCAGATGATGCAGCCAATGATGGATCAATTAAAAGTCTGTTTATA
TGTGTTGCGAAACTGATCGTGCATCTCTCTTTCTTGGGAAAGTCAAATGGTTTTGATTGCAAATGACTGTGGAGCCTTTC
GATGCCGTATGGGAGCTAGAGCCTGAAAGGCGATGAAGGACCAAAAGCAAGGCATTTTCGACATGGCAACAGAGCAAAGA
TACTGATGGATAAAGAGAGTCTGAGGTAGACATGTGCTCCAATATTTTCATGTGCTTTAGCGTTAGTTGCTAGGAGGCAG
GCAGCCACAAAAGAGTAGAGGATTTGTGGGAAGAGAGCCGGGCGAGATGAAAATGAGATGACCAAAATAAAGGCAGAGAC
GAGGTGACAGTGGCACAAGGCAAAGCGAGCTAGGCACTGACACTCCAGATGTCCTGCGTGTGTTTCAGTTTTGCGTTGTT
CTGTAATTTCCCCTGCTTAATTCCTTTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis