Browse Element(s) Details


Os.14049.1.S1_at

Description gb:AK069466.1
DB_XREF= gi:32979490
TID=Os.14049.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gibberellin 20-oxidase (OSJNBa0096G08.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024I15, full insert sequence.
FL= gb:AK069466.1 gb:AK104871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3789911/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14049.1.S1_at--694--6871Chr10:19968344..19968731 (25 bp)
GTATTTACAGGTCTACAGTGCACCG
LOC_Os10g37899
Os.14049.1.S1_at--736--2131Chr10:19968721..19968745 (25 bp)
ACAGTGCACCGTGTTGTTGCAGTTG
LOC_Os10g37899
Os.14049.1.S1_at--675--2771Chr10:19968749..19969006 (25 bp)
AAGAGCGATATTCTGCGGCTTTTTT
LOC_Os10g37899
Os.14049.1.S1_at--1161--1591Chr10:19969047..19969071 (25 bp)
AGCTGTTGCAGCGAGTCATGCCCAC
LOC_Os10g37899
Os.14049.1.S1_at--596--1791Chr10:19969163..19969183 (21 bp)
ACCGAGGTTCTCACCTATAAAGAGT
LOC_Os10g37899
Os.14049.1.S1_at--776--5871Chr10:19969207..19969231 (25 bp)
GAGCGCTACATACAAATAGTCCTAT
LOC_Os10g37899
Os.14049.1.S1_at--409--991Chr10:19969477..19969501 (25 bp)
AGGAGGCTAACATGTGCTACACGGC
LOC_Os10g37899
Os.14049.1.S1_at--1128--8691Chr10:19969519..19969543 (25 bp)
TGTCCATTTTTCTTCTGCGTTTAGA
LOC_Os10g37899
Os.14049.1.S1_at--514--7391Chr10:19969570..19969594 (25 bp)
GTGTTGTTTTACTGTAACGCTGTAA
LOC_Os10g37899
Os.14049.1.S1_at--517--3791Chr10:19969642..19969666 (25 bp)
CTCGACACCAACCTGAACTTTTTAT
LOC_Os10g37899
Os.14049.1.S1_at--37--8511Chr10:19969722..19969746 (25 bp)
TGGACTAGTATTCTTGTTGACTTGG
LOC_Os10g37899
Target Sequence 
GTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAAC
CCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGA
CTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTATGCTTTTNCATGTGTNNAAGGAGGCTAACATGTGCTAC
ACGGCCGGCCATCGTTCTCCNTTGTCCATTTTTCTTCTGCGTTTAGACNNNATCACAGTAGTCCAGAAGGTTNTTTGTGT
TGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGNGCTATGCTTGATTNNTCTCTCCACTGCTCGACACCAAC
CTGAACTTTTTATTGTTTGTCGTTCAAAAAAAAANNTTTTTATNGTCACCTGCGAGCTGACTGNNGTGTTTGGACTAGTA
TTCTTGTTGACTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis