Browse Element(s) Details


Os.19456.1.S1_x_at

Description gb:AK101829.1
DB_XREF= gi:32987038
TID=Os.19456.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068G21, full insert sequence.
FL= gb:AK101829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g131607/11F-box family protein, putative
LOC_Os10g378302/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed
LOC_Os02g13160Os.19456.1.S1_x_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.19456.1.S1_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.3246.2.S1_at2/112+7012780..7014847F-box family protein, putative
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed
LOC_Os02g13180NANA2+7024790..7025386Skp1 family, dimerisation domain containing protein, expressed
LOC_Os02g13190OsAffx.19451.3.S1_s_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.19451.3.S1_x_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.24480.1.S1_x_at1/112+7026620..7028304expressed protein
LOC_Os02g13200Os.5171.1.S1_at10/112+7032348..7034839expressed protein
LOC_Os02g13210OsAffx.32083.1.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.3.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.1.S1_at6/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.4.S1_x_at3/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.2.S1_x_at1/112+7039049..7042945Transposable element protein, putative, Transposase_24

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19456.1.S1_x_at--233--191Chr02:7013086..7013110 (25 bp)
ATTTCACTCTGTGGCATACCTTCAG
LOC_Os02g13160
Os.19456.1.S1_x_at--248--9391Chr02:7013030..7013054 (25 bp)
TCGATTTCAGCTTCCGTGTGTTAAC
LOC_Os02g13160
Os.19456.1.S1_x_at--1021--10651Chr02:7013019..7013043 (25 bp)
TTCCGTGTGTTAACCTACAGCTTAT
LOC_Os02g13160
Os.19456.1.S1_x_at--481--6571Chr02:7012987..7013011 (25 bp)
GATTCATCTCGGGAGGTTCTACAAG
LOC_Os02g13160
Os.19456.1.S1_x_at--151--6531Chr02:7012961..7012985 (25 bp)
GATTTGGACGCCGAGCTTGCAGCAC
LOC_Os02g13160
Os.19456.1.S1_x_at--212--9032Chr10:19924345..19924369 (25 bp)
TGCAGCACTGAGCATGTCCATGGTT
LOC_Os10g37830
Os.19456.1.S1_x_at--646--7911Chr02:7012923..7012947 (25 bp)
GGTTGGGACCAGAAGCCTGTTCGCT
LOC_Os02g13160
Os.19456.1.S1_x_at--241--5073Chr10:19924672..19924696 (25 bp)
GCAGCTTGCAGCCTAATTCTATTTT
LOC_Os10g37830
Os.19456.1.S1_x_at--5--7411Chr02:7012538..7012562 (25 bp)
GTGATCGGTAACATGGATGTTCTCA
NONE
Os.19456.1.S1_x_at--142--6731Chr02:7012520..7012544 (25 bp)
GTTCTCATATAATTAGTGTCTCCTT
NONE
Os.19456.1.S1_x_at--964--351Chr02:7012512..7012536 (25 bp)
ATAATTAGTGTCTCCTTGATTGTGC
NONE
Target Sequence 
ATTTCACTCTGTGGCATACCTTCAGCAAATATGGTGCTTTGAAGTGGTTGGAGAGATCGATTTCAGCTTCCGTGTGTTAA
CCTACAGCTTATACTTCAGGATTCATCTCGGGAGGTTCTACAAGCGATTTGGACGCCGAGCTTGCAGCACTGAGCATGTC
CATGGTTGGGACCAGAAGCCTGTTCGCTTCCAGCTCTCCACCTNTNNNNNNCNNNNNNNNNNNNCTCAGTGNTCCCTGGG
TGAGCCCGGGAGCTGGGTACTTTACCNTGCTGGCNAATTTTGTGGTCTCAAAGCCTGACCNAACNATCAAGCTGAAGTTC
TCGATGGCNNAGATTGATTNNACNCACACNAAAGGTNGGTCTTTNNGTCGACTCGGCGTTCATATACCCNAAGGGCTTTC
AGCANGGAGAGGATGGTGAGGTCTCAGAAATGTAGATGNTGACAAGGAACTTACATTAGATTGTAGACNAATGCAGCTTG
CAGCCTAATTCTATTTTTAATCTGGGCTCATGTAGNCNAAGGTGTATATAATTGTAGGCTTCAATTTTGTGTGATCGGTA
ACATGGATGTTCTCATATAATTAGTGTCTCCTTGATTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19456.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis