Browse Element(s) Details


OsAffx.24480.1.S1_x_at

Description tigr:9630.m02723
TID=OsAffx.24480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2859011/11hypothetical protein
LOC_Os02g131901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28560OsAffx.24479.1.S1_at9/112+16897994..16899026hypothetical protein
LOC_Os02g28570OsAffx.2778.1.S1_at11/112+16901844..16906742hypothetical protein
LOC_Os02g28570OsAffx.15255.1.S1_x_at1/112+16901844..16906742hypothetical protein
LOC_Os02g28580Os.18336.1.S1_at11/112+16909659..16913424expressed protein
LOC_Os02g28590OsAffx.24480.1.S1_x_at11/112+16916519..16917191hypothetical protein
LOC_Os02g28590Os.28385.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.25784.1.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.19451.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28600OsAffx.17122.2.S1_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28600OsAffx.17122.2.S1_s_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28610NANA2+16925097..16925786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28620NANA2+16928604..16935355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28630NANA2+16936541..16940466transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28640NANA2+16941982..16942443transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24480.1.S1_x_at--871--2091Chr02:16916565..16916589 (25 bp)
ACATCCTCCGTGTCATCAGGGCCAA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--492--1411Chr02:16916595..16916619 (25 bp)
AGAACGAGTACGTGTCAGTCGGCAA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--988--7432Chr02:16916606..16916630 (25 bp)
GTGTCAGTCGGCAAGCTGGTCCTCG
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--62--9291Chr02:16916705..16916853 (25 bp)
TCCGGCGAGGTCGTAGCATCCAGGA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--491--6191Chr02:16916852..16916876 (25 bp)
GAGGACATCGAGGCGTCGCCTCAAG
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--1020--5091Chr02:16916947..16916971 (25 bp)
GCACGTTGGAGCTCAAGAAGTTCAA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--31--2831Chr02:16916964..16916988 (25 bp)
AAGTTCAAGGCGATAGCCTCGCCGA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--317--1071Chr02:16917024..16917048 (25 bp)
AGGGAAGGTGGACTGGGCGGAGCAC
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--303--7791Chr02:16917074..16917098 (25 bp)
GGTCGCAGTACTTCACGACGCGGGA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--12--9351Chr02:16917076..16917100 (25 bp)
TCGCAGTACTTCACGACGCGGGAGA
LOC_Os02g28590
OsAffx.24480.1.S1_x_at--1061--1071Chr02:16917100..16917124 (25 bp)
AGGGCAGCGCCCTTGACGACGTTGG
LOC_Os02g28590
Target Sequence 
ACATCCTCCGTGTCATCAGGGCCAAGGACGAGAACGAGTACGTGTCAGTCGGCAAGCTGGTCCTCGCCCTCAACAAGCGC
CTCGCCATGGCAGGCCCGGCGCTGGCCGGCGCTGCCACGCTCGCCGCAGCGTTCATCGGCTCCGGCGAGGTCGTAGCATC
CAGGAGGACATCGAGGCGTCGCCTCAAGGAGGCCGACGTCGAGCAGAGGGAGAACTGCAAGGTGTTCGAGACGAAGGTGG
CGCTGCAGCTCGGCCGGAGCACGTTGGAGCTCAAGAAGTTCAAGGCGATAGCCTCGCCGACGGTCAAGGACGAGGACATC
AAGGAATTTGCCGGGAGGGAAGGTGGACTGGGCGGAGCACGGGTCGGCGCCGCCGCCGTGGTGGTGGTCGCAGTACTTCA
CGACGCGGGAGAGGGCAGCGCCCTTGACGACGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24480.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis