Browse Element(s) Details


OsAffx.17122.2.S1_s_at

Description tigr:9630.m02724
TID=OsAffx.17122.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2860011/11F-box domain containing protein
LOC_Os08g2419011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28560OsAffx.24479.1.S1_at9/112+16897994..16899026hypothetical protein
LOC_Os02g28570OsAffx.2778.1.S1_at11/112+16901844..16906742hypothetical protein
LOC_Os02g28570OsAffx.15255.1.S1_x_at1/112+16901844..16906742hypothetical protein
LOC_Os02g28580Os.18336.1.S1_at11/112+16909659..16913424expressed protein
LOC_Os02g28590OsAffx.24480.1.S1_x_at11/112+16916519..16917191hypothetical protein
LOC_Os02g28590Os.28385.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.25784.1.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.19451.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28600OsAffx.17122.2.S1_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28600OsAffx.17122.2.S1_s_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28610NANA2+16925097..16925786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28620NANA2+16928604..16935355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28630NANA2+16936541..16940466transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28640NANA2+16941982..16942443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28650Os.47463.1.S1_x_at5/112+16943343..16947042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28650Os.14491.2.S1_x_at4/112+16943343..16947042transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17122.2.S1_s_at--1076--5912Chr08:14469141..14469165 (25 bp)
GAGCTTGACGCCCATTGCAAGGATG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--354--5812Chr08:14469147..14469171 (25 bp)
GACGCCCATTGCAAGGATGATCACG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--892--2912Chr08:14469159..14469183 (25 bp)
AAGGATGATCACGACATGGCCACAG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--92--8852Chr08:14469164..14469188 (25 bp)
TGATCACGACATGGCCACAGAATTG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--1052--5652Chr08:14469171..14469195 (25 bp)
GACATGGCCACAGAATTGACAGTAG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--606--4372Chr08:14469177..14469201 (25 bp)
GCCACAGAATTGACAGTAGCAAGCG
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--728--9272Chr08:14469205..14469229 (25 bp)
TCCGATGGTGCCCTGCCATCCGTGA
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--882--4812Chr08:14469236..14469260 (25 bp)
GCTCAGGTTGTCAGTAGCCGATGCT
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--939--1672Chr08:14469251..14469275 (25 bp)
AGCCGATGCTGAAGGCCGCGTCAAT
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--993--9512Chr08:14469277..14469301 (25 bp)
TCTACAACAGCAAACGGCACATGAT
LOC_Os08g24190
OsAffx.17122.2.S1_s_at--25--2152Chr08:14469283..14469307 (25 bp)
ACAGCAAACGGCACATGATCCATCA
LOC_Os08g24190
Target Sequence 
GAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACAGTAGCAAGCGTCCTCCGATGGTGCCCTGC
CATCCGTGAGCTACGGCTCAGGTTGTCAGTAGCCGATGCTGAAGGCCGCGTCAATGTGATCTACAACAGCAAACGGCACA
TGATCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17122.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis