Browse Element(s) Details


Os.6846.1.S1_at

Description gb:AF035196
DB_XREF= gi:2827172
DB_XREF=AF035196
CLONE=GAR1
TID=Os.6846.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative arm repeat containing protein (OSJNBb0028C01.32), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3785011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6846.1.S1_at--883--4051Chr10:19937438..19937462 (25 bp)
CGAGAAGAGCGTCCCCAACCTGGTG
LOC_Os10g37850
Os.6846.1.S1_at--221--3891Chr10:19937526..19937550 (25 bp)
CTGTCGGCGAGCAAGCGCTGCAAGA
LOC_Os10g37850
Os.6846.1.S1_at--354--2671Chr10:19937685..19937709 (25 bp)
AAGCGAACGACCACCAGTAGCAGTA
LOC_Os10g37850
Os.6846.1.S1_at--667--5011Chr10:19937704..19937728 (25 bp)
GCAGTAAGCTAGTAGCCTTCCTTTT
LOC_Os10g37850
Os.6846.1.S1_at--439--2431Chr10:19937745..19937769 (25 bp)
AAAATCCCGTGCTGTTTTTCATAGC
LOC_Os10g37850
Os.6846.1.S1_at--445--6011Chr10:19937795..19937819 (25 bp)
GAGAGCATCGGCGTTTATCTGATCT
LOC_Os10g37850
Os.6846.1.S1_at--895--10151Chr10:19937810..19937834 (25 bp)
TATCTGATCTGGACATAAACCCGTT
LOC_Os10g37850
Os.6846.1.S1_at--201--9831Chr10:19937825..19937849 (25 bp)
TAAACCCGTTGTAATATCGTCGCCG
LOC_Os10g37850
Os.6846.1.S1_at--900--7231Chr10:19937843..19937867 (25 bp)
GTCGCCGTCTAATTCCGCTGTGTAT
LOC_Os10g37850
Os.6846.1.S1_at--1124--4211Chr10:19937857..19937881 (25 bp)
CCGCTGTGTATGGAACTCTGAATCA
LOC_Os10g37850
Os.6846.1.S1_at--631--3071Chr10:19937877..19937901 (25 bp)
AATCATTGCAGTTTCCGTGTCAGTG
LOC_Os10g37850
Target Sequence 
CGAGAAGAGCGTCCCCAACCTGGTGCAGCTGCTGGAGCCGAGCCCCCAGAACACGGCCAAGAAGTACGCCATCTCCTGCC
TCCTCACGCTGTCGGCGAGCAAGCGCTGCAAGAAGCTGATGATCTCGCACGGCGCCATTGGCTACCTCAAGAAGCTCTCC
GAGATGGACGTCGCCGGCGCCAAGAAGCTGCTCGAGAAGCTTGAGCGAGGCAAGCTGCGCAACCTCTTCAGTAGGAAGTA
AAAACCGAAGCGAACGACCACCAGTAGCAGTAAGCTAGTAGCCTTCCTTTTTGCCGTAAACTGTATAAAAATCCCGTGCT
GTTTTTCATAGCCTCTATGAAGTGTAAGTGGGGTGCAGAGAGCATCGGCGTTTATCTGATCTGGACATAAACCCGTTGTA
ATATCGTCGCCGTCTAATTCCGCTGTGTATGGAACTCTGAATCATTGCAGTTTCCGTGTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis